Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SMDB11_RS18320 Genome accession   NZ_HG326223
Coordinates   3931966..3932499 (-) Length   177 a.a.
NCBI ID   WP_025304438.1    Uniprot ID   -
Organism   Serratia marcescens subsp. marcescens Db11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3926966..3937499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMDB11_RS18285 (SMDB11_3686) - 3927308..3927715 (-) 408 WP_025304432.1 VOC family protein -
  SMDB11_RS18290 (SMDB11_3687) - 3927763..3928431 (-) 669 WP_025304433.1 glutathione S-transferase family protein -
  SMDB11_RS18295 (SMDB11_3688) - 3928428..3928871 (-) 444 WP_025304434.1 lipocalin-like domain-containing protein -
  SMDB11_RS18300 (SMDB11_3689) - 3929067..3929327 (+) 261 WP_025304435.1 YdgH/BhsA/McbA-like domain containing protein -
  SMDB11_RS18305 (SMDB11_3690) - 3929477..3930226 (+) 750 WP_025304436.1 3-oxoacyl-ACP reductase family protein -
  SMDB11_RS18310 (SMDB11_3691) - 3930490..3930702 (+) 213 WP_004936800.1 DUF1471 domain-containing protein -
  SMDB11_RS18315 (SMDB11_3692) - 3930924..3931880 (+) 957 WP_025304437.1 cyclase family protein -
  SMDB11_RS18320 (SMDB11_3693) ssb 3931966..3932499 (-) 534 WP_025304438.1 single-stranded DNA-binding protein SSB1 Machinery gene
  SMDB11_RS18325 (SMDB11_3694) uvrA 3932777..3935605 (+) 2829 WP_025304439.1 excinuclease ABC subunit UvrA -
  SMDB11_RS18330 (SMDB11_3695) - 3935835..3936887 (+) 1053 WP_025304440.1 NAD(P)-dependent alcohol dehydrogenase -
  SMDB11_RS18335 (SMDB11_3696) maa 3936919..3937476 (-) 558 WP_025304441.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18754.70 Da        Isoelectric Point: 5.2456

>NTDB_id=1111958 SMDB11_RS18320 WP_025304438.1 3931966..3932499(-) (ssb) [Serratia marcescens subsp. marcescens Db11]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQSSAP
AASSNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=1111958 SMDB11_RS18320 WP_025304438.1 3931966..3932499(-) (ssb) [Serratia marcescens subsp. marcescens Db11]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACGCGTAAATGGACCGATCAGTCCGGCGTGGAAAAATACACCACCGAAGTGGTGGTTAACGTTGG
CGGTACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCGGCGCAGAGCAGCGCTCCG
GCGGCCAGCAGCAACGAACCACCAATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.176

100

0.763
  ssb Glaesserella parasuis strain SC1401

56.684

100

0.599
  ssb Neisseria meningitidis MC58

46.524

100

0.492
  ssb Neisseria gonorrhoeae MS11

46.524

100

0.492

Multiple sequence alignment