Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ACMCNG_RS08485 Genome accession   NZ_AP038785
Coordinates   1883711..1884517 (+) Length   268 a.a.
NCBI ID   WP_226691992.1    Uniprot ID   -
Organism   Rodentibacter sp. THUN1654     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1878711..1889517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMCNG_RS08470 (THUN1654_16280) hslO 1879160..1880035 (+) 876 WP_226691989.1 Hsp33 family molecular chaperone HslO -
  ACMCNG_RS08475 (THUN1654_16290) - 1880099..1880944 (-) 846 WP_226691990.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  ACMCNG_RS08480 (THUN1654_16300) - 1881000..1883612 (-) 2613 WP_226691991.1 penicillin-binding protein 1A -
  ACMCNG_RS08485 (THUN1654_16310) comA 1883711..1884517 (+) 807 WP_226691992.1 competence protein ComA Machinery gene
  ACMCNG_RS08490 (THUN1654_16320) - 1884530..1885045 (+) 516 WP_226691993.1 PilN domain-containing protein -
  ACMCNG_RS08495 (THUN1654_16330) - 1885042..1885560 (+) 519 WP_226691994.1 hypothetical protein -
  ACMCNG_RS08500 (THUN1654_16340) - 1885563..1885949 (+) 387 WP_226691995.1 hypothetical protein -
  ACMCNG_RS08505 (THUN1654_16350) comE 1885958..1887346 (+) 1389 WP_226691996.1 type IV pilus secretin PilQ Machinery gene
  ACMCNG_RS08510 (THUN1654_16360) - 1887398..1888126 (+) 729 WP_226691997.1 double zinc ribbon domain-containing protein -
  ACMCNG_RS08515 (THUN1654_16370) nfuA 1888226..1888810 (+) 585 WP_226691998.1 Fe-S biogenesis protein NfuA -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31820.24 Da        Isoelectric Point: 5.9301

>NTDB_id=111191 ACMCNG_RS08485 WP_226691992.1 1883711..1884517(+) (comA) [Rodentibacter sp. THUN1654]
MPMLYKKRKTLQIGVHRLQNQFQFVWLNTAQQVQFLCLSAEEHYIESALMVRLAQNFSQNNVNFRLVGSISPHLTWSKTL
LLPHTLNAQECEQQCHFVLQKELPIPLEELWFDYTSTPLKQGFRLDIHAIRRQVVNEVQKDYGQLSLGILDITHYAILRA
FRFILGEDRDNSLYLYQDETYCFAIMESFHQQQLLQTSENLTALYEQFCQRFEPEIEHIYVYQAENITQTDLPENWQRVK
TQFPFIALGNALWQMDLHQNSADFQPHF

Nucleotide


Download         Length: 807 bp        

>NTDB_id=111191 ACMCNG_RS08485 WP_226691992.1 1883711..1884517(+) (comA) [Rodentibacter sp. THUN1654]
ATGCCAATGCTTTATAAAAAACGGAAAACTTTGCAAATTGGTGTGCATCGGCTGCAGAATCAATTTCAGTTTGTTTGGCT
GAATACTGCACAACAAGTTCAATTTCTTTGCCTATCGGCAGAAGAACATTATATTGAAAGCGCACTTATGGTGCGTTTGG
CACAAAATTTTTCACAAAATAATGTTAACTTTCGCTTGGTCGGAAGCATTTCCCCTCATCTTACTTGGTCGAAAACCTTA
CTTTTACCTCATACATTGAATGCGCAAGAATGTGAGCAACAATGCCATTTTGTCTTGCAAAAAGAATTGCCGATACCTCT
TGAAGAACTTTGGTTTGATTACACTTCAACACCCTTAAAACAAGGCTTTCGATTGGATATTCACGCAATACGCCGACAAG
TGGTAAATGAAGTGCAAAAGGATTATGGACAATTGTCGTTGGGTATATTGGATATTACACATTACGCTATTTTGCGCGCA
TTTCGTTTTATTTTAGGCGAAGATCGTGACAATTCCTTATATCTATATCAAGACGAAACTTATTGTTTTGCAATAATGGA
ATCGTTTCATCAGCAACAATTATTACAAACATCAGAAAATTTAACCGCACTTTACGAGCAATTTTGCCAACGTTTTGAAC
CTGAGATTGAGCATATTTACGTTTATCAAGCAGAGAATATTACACAAACCGACTTGCCTGAAAACTGGCAAAGAGTGAAG
ACTCAATTTCCTTTTATTGCGCTTGGAAACGCACTTTGGCAAATGGATTTACATCAAAATTCAGCGGATTTTCAACCGCA
CTTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae Rd KW20

51.562

95.522

0.493
  comA Haemophilus influenzae 86-028NP

50.192

97.388

0.489

Multiple sequence alignment