Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GJA_RS00640 Genome accession   NZ_HG322949
Coordinates   146096..146599 (+) Length   167 a.a.
NCBI ID   WP_038487603.1    Uniprot ID   W0UWN0
Organism   Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 141096..151599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJA_RS00630 (GJA_131) - 141632..142522 (-) 891 WP_081905189.1 transporter substrate-binding domain-containing protein -
  GJA_RS00635 (GJA_132) uvrA 142693..145545 (-) 2853 WP_038487600.1 excinuclease ABC subunit UvrA -
  GJA_RS00640 (GJA_133) ssb 146096..146599 (+) 504 WP_038487603.1 single-stranded DNA-binding protein Machinery gene
  GJA_RS00645 (GJA_134) - 146735..148000 (+) 1266 WP_038487606.1 site-specific integrase -
  GJA_RS00650 (GJA_135) - 147972..149516 (+) 1545 WP_038487609.1 site-specific integrase -
  GJA_RS00655 (GJA_136) - 149513..151516 (+) 2004 WP_038487612.1 integrase -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18223.48 Da        Isoelectric Point: 5.9467

>NTDB_id=1111892 GJA_RS00640 WP_038487603.1 146096..146599(+) (ssb) [Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628]
MASVNKVIIVGNLGRDPEIRYMPSGDAIANIAVATSYKSKDRNTGEQKELTEWHRISFFGRLAEIVGQYLKKGSSVYVEG
RLQTRKYTDKDGVEKYATDIIAEQMQMLGGRQGMGGDSMDDMGGGNSYENSAPSRPAPAPRPQPAPAPRPAPKPAPNFSD
MDDDIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=1111892 GJA_RS00640 WP_038487603.1 146096..146599(+) (ssb) [Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628]
ATGGCATCAGTCAACAAAGTCATCATCGTCGGCAATTTGGGCCGCGATCCGGAAATCCGCTACATGCCAAGCGGCGATGC
AATCGCCAACATTGCTGTTGCGACATCGTACAAATCCAAAGACCGCAACACCGGCGAGCAAAAAGAGTTGACGGAATGGC
ATCGTATCTCGTTTTTCGGCCGCCTGGCTGAAATCGTCGGCCAATACCTGAAAAAAGGTTCGTCGGTCTACGTCGAAGGC
CGCCTGCAAACCCGTAAATACACCGACAAGGACGGCGTCGAGAAATACGCGACCGACATCATCGCCGAACAAATGCAAAT
GCTGGGCGGCCGCCAGGGCATGGGCGGCGATTCGATGGACGACATGGGCGGCGGCAATTCATATGAAAACAGCGCCCCTA
GCCGTCCAGCGCCGGCACCACGGCCACAACCGGCGCCAGCGCCACGTCCGGCACCGAAACCGGCGCCGAATTTTTCGGAT
ATGGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W0UWN0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

55.114

100

0.581
  ssb Vibrio cholerae strain A1552

51.397

100

0.551
  ssb Neisseria meningitidis MC58

51.124

100

0.545
  ssb Glaesserella parasuis strain SC1401

48.352

100

0.527

Multiple sequence alignment