Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   HMPREF9425_RS02005 Genome accession   NZ_GL831112
Coordinates   377924..378958 (+) Length   344 a.a.
NCBI ID   WP_371748832.1    Uniprot ID   -
Organism   Streptococcus vestibularis ATCC 49124     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 372924..383958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9425_RS01970 - 374285..374863 (+) 579 WP_003094615.1 hypothetical protein -
  HMPREF9425_RS01975 (HMPREF9425_0415) - 374882..375226 (+) 345 WP_003096294.1 hypothetical protein -
  HMPREF9425_RS01980 (HMPREF9425_0416) - 375264..375506 (+) 243 WP_003096296.1 hypothetical protein -
  HMPREF9425_RS01985 (HMPREF9425_0417) - 375605..376381 (+) 777 WP_003096299.1 FxLYD domain-containing protein -
  HMPREF9425_RS01990 (HMPREF9425_0418) - 376413..376712 (-) 300 WP_003096302.1 hypothetical protein -
  HMPREF9425_RS01995 (HMPREF9425_0419) - 376709..377128 (-) 420 WP_003096304.1 HIT family protein -
  HMPREF9425_RS02000 (HMPREF9425_0420) pptA 377193..377924 (+) 732 WP_003096306.1 ABC transporter ATP-binding protein Regulator
  HMPREF9425_RS02005 (HMPREF9425_0421) pptB 377924..378958 (+) 1035 WP_371748832.1 ABC transporter permease Regulator
  HMPREF9425_RS02010 (HMPREF9425_0422) ccrZ 379016..379807 (+) 792 WP_002884270.1 cell cycle regulator CcrZ -
  HMPREF9425_RS02015 (HMPREF9425_0423) trmB 379817..380458 (+) 642 WP_003096317.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  HMPREF9425_RS02025 (HMPREF9425_0424) - 380675..381856 (-) 1182 WP_003096319.1 NAD(P)/FAD-dependent oxidoreductase -
  HMPREF9425_RS02030 (HMPREF9425_0425) ilvD 381969..383687 (+) 1719 WP_002891655.1 dihydroxy-acid dehydratase -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 39917.36 Da        Isoelectric Point: 10.5986

>NTDB_id=1111733 HMPREF9425_RS02005 WP_371748832.1 377924..378958(+) (pptB) [Streptococcus vestibularis ATCC 49124]
MAKLFKERSKRFNARCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLRHFPKNPWAIILGLLVLCLLLPFWGNIATYLEP
ADKHYLLVKEEEVLDHVKKATGRAFRFWVIVQSLIFILVIPLFLALGLPVWGVILVAVAMAILKYFIFQKKAQPFYKQSG
LNWTEAIAAENKRQQSILKFFSLFTNVKGITSSVKRRAYLDGILKRTKKDKEHTWYNLYLRAFLRSGDYFALSLRLFALT
LLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPVGKDMQVSNLKRLISQIVLGMTLVQAICLFDLKFS
LILVGMMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1111733 HMPREF9425_RS02005 WP_371748832.1 377924..378958(+) (pptB) [Streptococcus vestibularis ATCC 49124]
ATAGCTAAGCTATTTAAGGAGCGTAGCAAGCGATTCAATGCCCGCTGTGCTAAGTATAGTCGCTACGTCTTTAATGATCA
CTTTATCTTGGTTCTTCTCTTTCTGCTAGGTTTTGTATTGGTTCAGTATAGCCAGTTGCTTCGACATTTTCCAAAGAATC
CGTGGGCAATCATTCTTGGTTTGCTAGTGCTTTGTCTTCTATTGCCTTTCTGGGGGAATATTGCGACTTATTTAGAGCCA
GCTGATAAGCATTACCTTTTGGTGAAGGAAGAAGAGGTGTTAGACCATGTTAAGAAGGCAACAGGGCGTGCTTTTAGATT
TTGGGTAATCGTACAAAGCCTGATTTTTATTTTGGTTATTCCGCTCTTTTTAGCCTTGGGACTTCCAGTTTGGGGAGTTA
TCCTTGTAGCTGTGGCTATGGCTATTCTTAAGTACTTCATTTTTCAGAAAAAGGCTCAACCTTTTTATAAGCAGTCTGGA
CTGAATTGGACTGAGGCTATTGCAGCGGAAAATAAGCGTCAACAATCGATTCTGAAGTTCTTTTCACTCTTTACCAATGT
TAAAGGGATTACGTCGAGTGTTAAACGCCGTGCTTATTTGGATGGTATTCTCAAACGTACAAAGAAAGACAAGGAACATA
CTTGGTACAATCTTTACCTAAGAGCCTTCTTGCGTTCTGGGGATTACTTTGCCCTTAGTTTACGCCTGTTTGCCCTAACA
CTTCTAGTTATCTTTTTGGTTCCTGAAAAATGGTTGGCTATGGTGCTTGTGGTTGTTTTTGATTACCTCTTGCTCTTTCA
GCTCACGGCACTTAAATCGCACTTTGCTTATCAGAGAATGGCTAACCTTATGCCAGTTGGAAAAGACATGCAGGTAAGCA
ATCTTAAGCGCTTGATTAGCCAGATTGTACTTGGGATGACTCTGGTACAGGCTATTTGTCTCTTCGACCTTAAGTTTAGC
CTGATTTTGGTTGGAATGATGCTAGTTCTGAGCCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

97.384

100

0.974

  pptB Streptococcus thermophilus LMD-9

93.314

100

0.933


Multiple sequence alignment