Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   HMPREF9425_RS02000 Genome accession   NZ_GL831112
Coordinates   377193..377924 (+) Length   243 a.a.
NCBI ID   WP_003096306.1    Uniprot ID   -
Organism   Streptococcus vestibularis ATCC 49124     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 372193..382924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9425_RS01970 - 374285..374863 (+) 579 WP_003094615.1 hypothetical protein -
  HMPREF9425_RS01975 (HMPREF9425_0415) - 374882..375226 (+) 345 WP_003096294.1 hypothetical protein -
  HMPREF9425_RS01980 (HMPREF9425_0416) - 375264..375506 (+) 243 WP_003096296.1 hypothetical protein -
  HMPREF9425_RS01985 (HMPREF9425_0417) - 375605..376381 (+) 777 WP_003096299.1 FxLYD domain-containing protein -
  HMPREF9425_RS01990 (HMPREF9425_0418) - 376413..376712 (-) 300 WP_003096302.1 hypothetical protein -
  HMPREF9425_RS01995 (HMPREF9425_0419) - 376709..377128 (-) 420 WP_003096304.1 HIT family protein -
  HMPREF9425_RS02000 (HMPREF9425_0420) pptA 377193..377924 (+) 732 WP_003096306.1 ABC transporter ATP-binding protein Regulator
  HMPREF9425_RS02005 (HMPREF9425_0421) pptB 377924..378958 (+) 1035 WP_371748832.1 ABC transporter permease Regulator
  HMPREF9425_RS02010 (HMPREF9425_0422) ccrZ 379016..379807 (+) 792 WP_002884270.1 cell cycle regulator CcrZ -
  HMPREF9425_RS02015 (HMPREF9425_0423) trmB 379817..380458 (+) 642 WP_003096317.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  HMPREF9425_RS02025 (HMPREF9425_0424) - 380675..381856 (-) 1182 WP_003096319.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26836.14 Da        Isoelectric Point: 4.4855

>NTDB_id=1111732 HMPREF9425_RS02000 WP_003096306.1 377193..377924(+) (pptA) [Streptococcus vestibularis ATCC 49124]
MLKLEKVTGGYANIPVLKDVTFEVADGELVGLIGLNGAGKSTTINEIIGLLTPYGGQIAIDELTIQQDPASYRQKIGYIP
ETPSLYEELTLREHLETVLMAYGLDVTEGMARADKYLKLFRLDEKLDWFPTQFSKGMKQKVMIICAFIVGPSLLIVDEPF
LGLDPLAISDLIELLAEEKAKGKAILMSTHVLDSAEKMCDRFVILHHGQVLAQGTLEELRQTFGNDSASLNDIYMQLTKG
ELS

Nucleotide


Download         Length: 732 bp        

>NTDB_id=1111732 HMPREF9425_RS02000 WP_003096306.1 377193..377924(+) (pptA) [Streptococcus vestibularis ATCC 49124]
ATGCTTAAATTAGAAAAGGTGACGGGTGGTTACGCTAATATTCCCGTCCTAAAAGATGTGACTTTTGAGGTGGCTGATGG
TGAATTGGTTGGTCTCATTGGTCTTAATGGTGCTGGGAAATCAACAACAATTAACGAGATTATTGGTCTCTTAACACCTT
ATGGGGGACAGATTGCCATTGATGAGTTAACGATTCAACAAGATCCAGCTAGCTATCGTCAGAAGATTGGCTATATTCCT
GAAACGCCAAGTCTTTATGAAGAATTGACGCTTCGTGAACATTTGGAAACGGTGCTGATGGCATATGGCCTTGATGTTAC
AGAGGGAATGGCACGTGCGGACAAGTATCTTAAGCTTTTTCGCTTAGATGAAAAGTTGGACTGGTTCCCGACTCAGTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCCTTTATTGTTGGTCCAAGTCTTCTCATTGTTGATGAGCCCTTC
CTAGGTTTGGATCCCTTGGCGATTTCTGATTTGATTGAACTTTTGGCTGAGGAAAAGGCTAAGGGAAAGGCGATTCTCAT
GTCGACTCACGTTTTGGATTCGGCTGAGAAGATGTGTGATCGCTTTGTGATTTTGCACCATGGACAGGTCTTGGCACAAG
GGACTCTCGAGGAGCTCCGTCAGACTTTTGGCAACGATAGTGCTAGTCTTAACGATATCTATATGCAGTTGACTAAGGGA
GAATTGTCATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

97.942

100

0.979
  pptA Streptococcus thermophilus LMD-9

95.885

100

0.959

Multiple sequence alignment