Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | HMPREF9425_RS00710 | Genome accession | NZ_GL831112 |
| Coordinates | 135640..136596 (+) | Length | 318 a.a. |
| NCBI ID | WP_003091902.1 | Uniprot ID | - |
| Organism | Streptococcus vestibularis ATCC 49124 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 130640..141596
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HMPREF9425_RS00670 (HMPREF9425_0138) | - | 131537..131899 (+) | 363 | WP_003095881.1 | DUF1033 family protein | - |
| HMPREF9425_RS00675 (HMPREF9425_0139) | comYA | 131980..132921 (+) | 942 | WP_003095883.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| HMPREF9425_RS00680 (HMPREF9425_0140) | comYB | 132803..133903 (+) | 1101 | WP_155809878.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| HMPREF9425_RS00685 (HMPREF9425_0141) | comYC | 133900..134226 (+) | 327 | WP_002885815.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| HMPREF9425_RS00690 (HMPREF9425_0142) | comYD | 134186..134614 (+) | 429 | WP_253665936.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| HMPREF9425_RS00695 (HMPREF9425_0143) | comGE | 134646..134876 (+) | 231 | WP_003095891.1 | competence type IV pilus minor pilin ComGE | - |
| HMPREF9425_RS00700 (HMPREF9425_0144) | comYF | 134863..135300 (+) | 438 | WP_003091908.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| HMPREF9425_RS00705 (HMPREF9425_0145) | comGG | 135278..135595 (+) | 318 | WP_003092009.1 | competence type IV pilus minor pilin ComGG | - |
| HMPREF9425_RS00710 (HMPREF9425_0146) | comYH | 135640..136596 (+) | 957 | WP_003091902.1 | class I SAM-dependent methyltransferase | Machinery gene |
| HMPREF9425_RS00715 (HMPREF9425_0147) | - | 136653..137846 (+) | 1194 | WP_003095894.1 | acetate kinase | - |
| HMPREF9425_RS00720 (HMPREF9425_0148) | - | 138097..138294 (+) | 198 | WP_002885716.1 | helix-turn-helix transcriptional regulator | - |
| HMPREF9425_RS00725 (HMPREF9425_0149) | - | 138308..138751 (+) | 444 | WP_037621248.1 | hypothetical protein | - |
| HMPREF9425_RS00730 (HMPREF9425_0150) | - | 138851..139513 (+) | 663 | WP_003095899.1 | CPBP family intramembrane glutamic endopeptidase | - |
| HMPREF9425_RS00735 (HMPREF9425_0151) | proC | 139539..140309 (-) | 771 | WP_003095901.1 | pyrroline-5-carboxylate reductase | - |
| HMPREF9425_RS00740 (HMPREF9425_0152) | pepA | 140325..141392 (-) | 1068 | WP_003095903.1 | glutamyl aminopeptidase | - |
Sequence
Protein
Download Length: 318 a.a. Molecular weight: 35734.61 Da Isoelectric Point: 4.3482
>NTDB_id=1111723 HMPREF9425_RS00710 WP_003091902.1 135640..136596(+) (comYH) [Streptococcus vestibularis ATCC 49124]
MNFEAIETAFELLLENVQTIESDLGTHAYDALIEQNSYYLGAEVANEVIIKNNEKLRALDLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTKDDQLDVLEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIADVVNSS
AVYIQEDAVRPHILKESDVIISDLPVGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAILLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTENAPETFVYPLSDLQNPEVLKDFTENFQKWKSDNSIF
MNFEAIETAFELLLENVQTIESDLGTHAYDALIEQNSYYLGAEVANEVIIKNNEKLRALDLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTKDDQLDVLEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIADVVNSS
AVYIQEDAVRPHILKESDVIISDLPVGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAILLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTENAPETFVYPLSDLQNPEVLKDFTENFQKWKSDNSIF
Nucleotide
Download Length: 957 bp
>NTDB_id=1111723 HMPREF9425_RS00710 WP_003091902.1 135640..136596(+) (comYH) [Streptococcus vestibularis ATCC 49124]
ATGAATTTTGAAGCAATTGAGACAGCCTTTGAGCTGTTGTTAGAAAATGTCCAAACCATTGAAAGTGATCTTGGAACCCA
TGCTTACGATGCGCTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTAGCTAATGAAGTCATTATCAAAAACAACG
AGAAATTACGTGCTCTTGATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTCTTATTTATCAAGCTAGGGCAATTG
GAAGCCTTACAGGCCAATCACCAGTTTACACCTGATGCTATTGGCTTTATCATCCTCTACCTACTCGAAGGTTTGACCAA
GGACGACCAATTAGATGTTTTGGAGATTGGTTCGGGGACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGAATGGAAGTTGACGATCTCCTTATCGATTTGTCAGCTAGTATTGCTGATGTGGTGAATTCGAGT
GCAGTTTACATCCAAGAAGATGCTGTTCGACCACACATTCTCAAAGAGAGTGATGTTATTATCAGTGACCTACCTGTTGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTTGCAGCAACTGGTGAACACACCTATGCCCATCACCTTCTCA
TGGAGCAATCACTCAAGTACTTGAAGAAAGATGGTATTGCTATTCTTTTGGCACCAACTAATCTTTTGACAAGTCCACAA
AGTGATTTGCTTAAGAAATGGCTATCAGGATATGCTGATATTATTGCTGTTATCACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTTAAAAAACAAACTGAAAATGCTCCTGAGACCTTTGTTTATCCACTTAGTG
ATTTGCAAAATCCAGAGGTCCTCAAAGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG
ATGAATTTTGAAGCAATTGAGACAGCCTTTGAGCTGTTGTTAGAAAATGTCCAAACCATTGAAAGTGATCTTGGAACCCA
TGCTTACGATGCGCTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTAGCTAATGAAGTCATTATCAAAAACAACG
AGAAATTACGTGCTCTTGATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTCTTATTTATCAAGCTAGGGCAATTG
GAAGCCTTACAGGCCAATCACCAGTTTACACCTGATGCTATTGGCTTTATCATCCTCTACCTACTCGAAGGTTTGACCAA
GGACGACCAATTAGATGTTTTGGAGATTGGTTCGGGGACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGAATGGAAGTTGACGATCTCCTTATCGATTTGTCAGCTAGTATTGCTGATGTGGTGAATTCGAGT
GCAGTTTACATCCAAGAAGATGCTGTTCGACCACACATTCTCAAAGAGAGTGATGTTATTATCAGTGACCTACCTGTTGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTTGCAGCAACTGGTGAACACACCTATGCCCATCACCTTCTCA
TGGAGCAATCACTCAAGTACTTGAAGAAAGATGGTATTGCTATTCTTTTGGCACCAACTAATCTTTTGACAAGTCCACAA
AGTGATTTGCTTAAGAAATGGCTATCAGGATATGCTGATATTATTGCTGTTATCACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTTAAAAAACAAACTGAAAATGCTCCTGAGACCTTTGTTTATCCACTTAGTG
ATTTGCAAAATCCAGAGGTCCTCAAAGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA159 |
70.159 |
99.057 |
0.695 |
| comYH | Streptococcus mutans UA140 |
70.159 |
99.057 |
0.695 |