Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Regulator
Locus tag   HMPREF9319_RS08840 Genome accession   NZ_GL397128
Coordinates   1838430..1838897 (+) Length   155 a.a.
NCBI ID   WP_231557406.1    Uniprot ID   -
Organism   Streptococcus equinus ATCC 700338     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1833430..1843897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9319_RS08805 (HMPREF9319_1836) - 1834164..1834460 (-) 297 WP_003066579.1 bacteriocin immunity protein -
  HMPREF9319_RS08810 (HMPREF9319_1837) - 1834460..1834678 (-) 219 WP_003066580.1 Blp family class II bacteriocin -
  HMPREF9319_RS11485 - 1834871..1834990 (-) 120 WP_253066439.1 CPBP family glutamic-type intramembrane protease -
  HMPREF9319_RS11225 (HMPREF9319_1838) - 1834987..1835307 (-) 321 WP_231557401.1 CPBP family intramembrane glutamic endopeptidase -
  HMPREF9319_RS11230 (HMPREF9319_1839) - 1835364..1835543 (-) 180 WP_003066584.1 hypothetical protein -
  HMPREF9319_RS08825 (HMPREF9319_1840) - 1835714..1836025 (-) 312 WP_003066586.1 hypothetical protein -
  HMPREF9319_RS08830 (HMPREF9319_1841) - 1836114..1836344 (-) 231 WP_003066588.1 bacteriocin -
  HMPREF9319_RS08835 (HMPREF9319_1842) - 1836589..1838367 (+) 1779 Protein_1793 peptide cleavage/export ABC transporter -
  HMPREF9319_RS08840 (HMPREF9319_1843) comB 1838430..1838897 (+) 468 WP_231557406.1 HlyD family efflux transporter periplasmic adaptor subunit Regulator
  HMPREF9319_RS08845 (HMPREF9319_1844) rsmA 1839031..1839903 (-) 873 WP_003066593.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  HMPREF9319_RS08850 (HMPREF9319_1845) - 1839984..1840508 (-) 525 WP_003066596.1 DUF1697 domain-containing protein -
  HMPREF9319_RS08855 (HMPREF9319_1846) rnmV 1840505..1841074 (-) 570 WP_041973731.1 ribonuclease M5 -
  HMPREF9319_RS08860 (HMPREF9319_1847) - 1841067..1841837 (-) 771 WP_003066600.1 TatD family hydrolase -
  HMPREF9319_RS11235 - 1841974..1842138 (-) 165 WP_231557405.1 LPXTG cell wall anchor domain-containing protein -
  HMPREF9319_RS11240 - 1842252..1842365 (-) 114 WP_231557400.1 Cna B-type domain-containing protein -
  HMPREF9319_RS11245 (HMPREF9319_1848) - 1842362..1843333 (-) 972 WP_003066603.1 Cna B-type domain-containing protein -
  HMPREF9319_RS11250 (HMPREF9319_1849) - 1843337..1843663 (-) 327 WP_041973728.1 hypothetical protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17128.55 Da        Isoelectric Point: 9.8537

>NTDB_id=1111705 HMPREF9319_RS08840 WP_231557406.1 1838430..1838897(+) (comB) [Streptococcus equinus ATCC 700338]
MQAQLDQTNLSKADTVLKASQSGILHVSDEFEGQTLLPQGSQIAEIYPDIAKTQQVAIRYYVDSTHVSQLKKGQTVRLTL
EKISNHAIVITGKISKIASSATQTKEGNIFEVTALATVDKQDSSKLKYGLQGKTISTIGKKTFFNYYKDKLLKDF

Nucleotide


Download         Length: 468 bp        

>NTDB_id=1111705 HMPREF9319_RS08840 WP_231557406.1 1838430..1838897(+) (comB) [Streptococcus equinus ATCC 700338]
TTGCAAGCGCAGCTTGACCAGACAAATCTCTCCAAAGCTGACACCGTTTTAAAAGCTAGTCAAAGTGGCATTTTACATGT
TTCTGATGAATTTGAAGGGCAAACGCTCTTGCCGCAAGGCAGTCAGATTGCAGAGATTTACCCAGATATTGCCAAAACAC
AGCAAGTCGCTATCCGCTATTACGTTGACTCCACTCATGTTAGTCAATTGAAAAAAGGACAGACTGTTCGCCTAACCCTT
GAAAAAATTAGCAATCACGCCATTGTTATCACTGGCAAAATCAGTAAAATTGCAAGTTCTGCCACACAAACCAAAGAAGG
AAATATCTTTGAGGTGACAGCACTAGCCACCGTTGATAAACAAGATAGCTCCAAACTAAAATATGGTTTACAAGGCAAAA
CAATCAGCACTATCGGCAAAAAAACTTTCTTTAATTATTACAAAGACAAGCTATTAAAAGATTTTTGA

Domains

Predicted by InterproScan.

HlyD family secretion protein (HlyD_3)

(16-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Streptococcus mutans UA159

58.209

86.452

0.503
  comB/nlmE Streptococcus mutans UA159

52.985

86.452

0.458
  comB Streptococcus gordonii str. Challis substr. CH1

39.073

97.419

0.381

Multiple sequence alignment