Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   HMPREF9319_RS06875 Genome accession   NZ_GL397128
Coordinates   1445890..1446699 (-) Length   269 a.a.
NCBI ID   WP_003065766.1    Uniprot ID   A0AAW6YDK1
Organism   Streptococcus equinus ATCC 700338     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1440890..1451699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9319_RS06865 (HMPREF9319_1432) smc 1441279..1444818 (-) 3540 WP_003065762.1 chromosome segregation protein SMC -
  HMPREF9319_RS06870 (HMPREF9319_1433) rnc 1444950..1445636 (-) 687 WP_003065764.1 ribonuclease III -
  HMPREF9319_RS06875 (HMPREF9319_1434) vicX 1445890..1446699 (-) 810 WP_003065766.1 MBL fold metallo-hydrolase Regulator
  HMPREF9319_RS06880 (HMPREF9319_1435) vicK 1446700..1448052 (-) 1353 WP_003065768.1 cell wall metabolism sensor histidine kinase VicK Regulator
  HMPREF9319_RS06885 (HMPREF9319_1436) vicR 1448045..1448755 (-) 711 WP_003065770.1 response regulator YycF Regulator
  HMPREF9319_RS06890 (HMPREF9319_1437) - 1449060..1449824 (+) 765 WP_003065772.1 amino acid ABC transporter ATP-binding protein -
  HMPREF9319_RS06895 (HMPREF9319_1438) - 1449835..1450647 (+) 813 WP_013852112.1 transporter substrate-binding domain-containing protein -
  HMPREF9319_RS06900 (HMPREF9319_1439) - 1450664..1451368 (+) 705 WP_003065775.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30343.37 Da        Isoelectric Point: 5.8277

>NTDB_id=1111695 HMPREF9319_RS06875 WP_003065766.1 1445890..1446699(-) (vicX) [Streptococcus equinus ATCC 700338]
MSENAFKYSILASGSTGNSFYVETPQKRFLIDAGLTGKKITSLLAEIDRKPEDLDAIFITHEHSDHIKGVGVLARRYNLD
VYANEKTWQMIDERNMIGKLDFAQKHIFERGKTLTLGDIDIESFGVSHDAVEPQFYRLMKDNKSFVILTDTGYVSDRMAG
IIENADGYLIESNHDVEILRSGAYPWSLKQRILSDKGHLSNEDGAGTMIRTIGNRTKKIYLGHLSKENNIKELAHMTMEN
NLIQADFGVGYDMKVFDTSPEEATPLTKL

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1111695 HMPREF9319_RS06875 WP_003065766.1 1445890..1446699(-) (vicX) [Streptococcus equinus ATCC 700338]
ATGTCTGAAAATGCTTTTAAATATAGTATTTTAGCCTCCGGTTCAACTGGAAATTCTTTTTATGTGGAAACACCACAAAA
ACGTTTTTTGATTGATGCGGGTTTGACTGGTAAGAAAATTACCAGTCTTCTTGCTGAAATTGACCGCAAACCAGAGGACT
TAGATGCTATTTTTATTACACACGAACATTCTGACCATATCAAAGGGGTTGGGGTGTTAGCACGTCGTTATAATCTTGAT
GTTTATGCGAATGAAAAAACGTGGCAAATGATTGATGAGCGAAATATGATTGGAAAGCTTGATTTCGCTCAAAAACATAT
TTTTGAACGTGGTAAAACATTGACACTTGGTGACATTGATATTGAAAGTTTTGGTGTTAGCCACGATGCCGTTGAGCCAC
AATTTTATCGTTTGATGAAAGATAATAAATCGTTTGTTATCTTAACAGATACAGGTTATGTTAGTGACCGCATGGCAGGA
ATTATTGAAAATGCTGACGGTTACTTAATTGAATCAAATCATGATGTTGAGATTTTACGTTCTGGTGCTTATCCGTGGAG
TTTGAAACAACGTATCCTATCTGATAAAGGGCACTTGTCAAACGAAGACGGTGCTGGGACAATGATTCGAACCATTGGAA
ATCGCACGAAGAAAATTTACCTTGGACATTTGAGTAAAGAAAACAATATCAAAGAATTGGCTCACATGACCATGGAAAAT
AATCTTATTCAAGCTGACTTTGGGGTTGGTTATGACATGAAAGTCTTTGACACCTCACCAGAGGAAGCAACACCATTAAC
AAAGTTATAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.952

100

0.77

Multiple sequence alignment