Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   HMPREF9319_RS01885 Genome accession   NZ_GL397128
Coordinates   381552..382214 (+) Length   220 a.a.
NCBI ID   WP_003063553.1    Uniprot ID   E0PC03
Organism   Streptococcus equinus ATCC 700338     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 376552..387214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9319_RS01860 (HMPREF9319_0371) - 376670..378070 (+) 1401 WP_003063536.1 Cof-type HAD-IIB family hydrolase -
  HMPREF9319_RS01865 (HMPREF9319_0372) - 378070..378426 (+) 357 WP_003063541.1 S1 RNA-binding domain-containing protein -
  HMPREF9319_RS01870 (HMPREF9319_0373) cysK 378539..379468 (-) 930 WP_003063544.1 cysteine synthase A -
  HMPREF9319_RS01875 (HMPREF9319_0374) - 379572..380198 (-) 627 WP_003063547.1 YigZ family protein -
  HMPREF9319_RS01880 (HMPREF9319_0375) comFA/cflA 380254..381555 (+) 1302 WP_003063550.1 DEAD/DEAH box helicase Machinery gene
  HMPREF9319_RS01885 (HMPREF9319_0376) comFC/cflB 381552..382214 (+) 663 WP_003063553.1 ComF family protein Machinery gene
  HMPREF9319_RS01890 (HMPREF9319_0377) hpf 382290..382838 (+) 549 WP_003063557.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  HMPREF9319_RS10925 - 382973..383656 (+) 684 Protein_369 transposase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25567.65 Da        Isoelectric Point: 9.1814

>NTDB_id=1111677 HMPREF9319_RS01885 WP_003063553.1 381552..382214(+) (comFC/cflB) [Streptococcus equinus ATCC 700338]
MICLLCGQEFSKKEQFLNLILMKKDDNGVCLECQKTFERIGDVHCPTCCRTGFSQQCPDCQAWEKQHHHVSHEALFTYNS
SMKDYFSKYKFQGDILLSHVFSKEIKQALKKYKNYTFVPVSISPKRLKERQFNQVTALLQAAKIPYEDLLIKREISKQSD
KTRKERLETLNPFSLKNVSKVPENVLIIDDIYTTGATLKGIYQLFYETGAKNVKSFTIVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=1111677 HMPREF9319_RS01885 WP_003063553.1 381552..382214(+) (comFC/cflB) [Streptococcus equinus ATCC 700338]
ATGATTTGCCTGCTCTGCGGACAAGAATTTTCCAAAAAAGAACAATTTTTAAACCTTATCTTAATGAAAAAAGATGACAA
TGGCGTGTGTCTGGAGTGTCAAAAAACATTTGAAAGAATAGGAGATGTTCATTGCCCAACCTGCTGCCGAACTGGATTTT
CTCAGCAATGTCCAGATTGTCAAGCGTGGGAAAAACAACATCATCACGTATCTCATGAAGCGCTTTTTACCTACAATTCT
TCAATGAAAGATTATTTCTCAAAATATAAATTTCAAGGAGATATTCTTTTAAGTCACGTTTTTTCAAAAGAAATCAAACA
AGCATTAAAAAAATATAAAAACTACACCTTTGTTCCAGTTTCCATAAGTCCAAAACGGCTAAAAGAAAGACAATTTAACC
AAGTAACAGCACTTTTACAAGCAGCTAAAATCCCCTACGAAGACTTACTAATCAAGAGAGAAATCAGTAAACAGTCCGAT
AAAACACGAAAAGAGCGCCTAGAAACTCTCAATCCTTTTTCTTTAAAAAATGTTTCAAAGGTGCCAGAAAATGTCTTGAT
TATCGATGATATTTACACAACTGGCGCCACTTTAAAGGGAATATATCAACTTTTCTATGAAACTGGAGCCAAAAATGTAA
AAAGTTTTACGATTGTGCGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E0PC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

50.909

100

0.509
  comFC/cflB Streptococcus pneumoniae TIGR4

50.455

100

0.505
  comFC/cflB Streptococcus pneumoniae Rx1

50.455

100

0.505
  comFC/cflB Streptococcus pneumoniae D39

50.455

100

0.505
  comFC/cflB Streptococcus pneumoniae R6

50.455

100

0.505
  comFC/cflB Streptococcus mitis SK321

49.545

100

0.495

Multiple sequence alignment