Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | ACOB85_RS09235 | Genome accession | NZ_CP184834 |
| Coordinates | 321428..322021 (+) | Length | 197 a.a. |
| NCBI ID | WP_005382767.1 | Uniprot ID | A0AAP6DB92 |
| Organism | Vibrio alginolyticus strain HoVa25 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 316428..327021
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACOB85_RS09220 (ACOB85_09220) | - | 317154..319715 (-) | 2562 | WP_005381325.1 | penicillin-binding protein 1A | - |
| ACOB85_RS09225 (ACOB85_09225) | pilM | 319860..320876 (+) | 1017 | WP_005381324.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| ACOB85_RS09230 (ACOB85_09230) | pilN | 320860..321435 (+) | 576 | WP_005381323.1 | PilN domain-containing protein | Machinery gene |
| ACOB85_RS09235 (ACOB85_09235) | pilO | 321428..322021 (+) | 594 | WP_005382767.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| ACOB85_RS09240 (ACOB85_09240) | pilP | 322011..322526 (+) | 516 | WP_005382766.1 | pilus assembly protein PilP | Machinery gene |
| ACOB85_RS09245 (ACOB85_09245) | pilQ | 322552..324297 (+) | 1746 | WP_262580159.1 | type IV pilus secretin PilQ | Machinery gene |
| ACOB85_RS09250 (ACOB85_09250) | aroK | 324485..325003 (+) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| ACOB85_RS09255 (ACOB85_09255) | aroB | 325036..326136 (+) | 1101 | WP_005381318.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 23029.56 Da Isoelectric Point: 5.0948
>NTDB_id=1111367 ACOB85_RS09235 WP_005382767.1 321428..322021(+) (pilO) [Vibrio alginolyticus strain HoVa25]
MVDWQDLEIDEMAEWPLLPQIVVIVLLIMAIQGLGYWFYLKPKEEQLNHLIQQEQTLKVALKIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSEHFLYRLPLNIELTGDFHDIGHFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEETKNDK
MVDWQDLEIDEMAEWPLLPQIVVIVLLIMAIQGLGYWFYLKPKEEQLNHLIQQEQTLKVALKIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSEHFLYRLPLNIELTGDFHDIGHFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEETKNDK
Nucleotide
Download Length: 594 bp
>NTDB_id=1111367 ACOB85_RS09235 WP_005382767.1 321428..322021(+) (pilO) [Vibrio alginolyticus strain HoVa25]
GTGGTTGATTGGCAGGATCTCGAAATAGATGAAATGGCCGAGTGGCCATTGTTGCCCCAGATTGTAGTAATCGTACTTCT
GATCATGGCGATTCAAGGCTTAGGTTATTGGTTTTACCTTAAACCGAAAGAAGAACAGTTGAATCACTTGATTCAGCAGG
AGCAGACACTCAAGGTGGCATTGAAGATCAAAGCGAACAAAGTGGCAGCGTTGCCTCAGCTTCAATCTCAATTGGATGAA
CTTACCACTCGTTACGAGTTATTACTGCAACAACTGCCTGCGCAAAAAGAGCTGGCTACAATGCTCGCTTCAGTGAATGA
GCTTGGCATCGACAATAAGCTGACTTTCACCCGAATCGACTGGGGCGAAAAACAATCAGAGCACTTCCTTTATCGTCTTC
CTTTAAACATAGAGTTAACGGGCGACTTTCATGACATCGGCCATTTTTCTCAGGCGATAGCGACGCTACCTCGAATCATC
ACGTTTAAAGATGTGACTTGGCAACGTGTCAGCCAAGAGAGCGAAACCCTGCACTTTCGGGTGCGTGCTAATACCTATCA
GTTTAAGCCGGAGGAGACGAAAAATGACAAGTAA
GTGGTTGATTGGCAGGATCTCGAAATAGATGAAATGGCCGAGTGGCCATTGTTGCCCCAGATTGTAGTAATCGTACTTCT
GATCATGGCGATTCAAGGCTTAGGTTATTGGTTTTACCTTAAACCGAAAGAAGAACAGTTGAATCACTTGATTCAGCAGG
AGCAGACACTCAAGGTGGCATTGAAGATCAAAGCGAACAAAGTGGCAGCGTTGCCTCAGCTTCAATCTCAATTGGATGAA
CTTACCACTCGTTACGAGTTATTACTGCAACAACTGCCTGCGCAAAAAGAGCTGGCTACAATGCTCGCTTCAGTGAATGA
GCTTGGCATCGACAATAAGCTGACTTTCACCCGAATCGACTGGGGCGAAAAACAATCAGAGCACTTCCTTTATCGTCTTC
CTTTAAACATAGAGTTAACGGGCGACTTTCATGACATCGGCCATTTTTCTCAGGCGATAGCGACGCTACCTCGAATCATC
ACGTTTAAAGATGTGACTTGGCAACGTGTCAGCCAAGAGAGCGAAACCCTGCACTTTCGGGTGCGTGCTAATACCTATCA
GTTTAAGCCGGAGGAGACGAAAAATGACAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
87.895 |
96.447 |
0.848 |
| pilO | Vibrio cholerae strain A1552 |
70.681 |
96.954 |
0.685 |