Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | ACOB85_RS09230 | Genome accession | NZ_CP184834 |
| Coordinates | 320860..321435 (+) | Length | 191 a.a. |
| NCBI ID | WP_005381323.1 | Uniprot ID | A0AAW9BSJ2 |
| Organism | Vibrio alginolyticus strain HoVa25 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 315860..326435
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACOB85_RS09215 (ACOB85_09215) | oxyR | 316189..317100 (+) | 912 | WP_005381326.1 | DNA-binding transcriptional regulator OxyR | - |
| ACOB85_RS09220 (ACOB85_09220) | - | 317154..319715 (-) | 2562 | WP_005381325.1 | penicillin-binding protein 1A | - |
| ACOB85_RS09225 (ACOB85_09225) | pilM | 319860..320876 (+) | 1017 | WP_005381324.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| ACOB85_RS09230 (ACOB85_09230) | pilN | 320860..321435 (+) | 576 | WP_005381323.1 | PilN domain-containing protein | Machinery gene |
| ACOB85_RS09235 (ACOB85_09235) | pilO | 321428..322021 (+) | 594 | WP_005382767.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| ACOB85_RS09240 (ACOB85_09240) | pilP | 322011..322526 (+) | 516 | WP_005382766.1 | pilus assembly protein PilP | Machinery gene |
| ACOB85_RS09245 (ACOB85_09245) | pilQ | 322552..324297 (+) | 1746 | WP_262580159.1 | type IV pilus secretin PilQ | Machinery gene |
| ACOB85_RS09250 (ACOB85_09250) | aroK | 324485..325003 (+) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| ACOB85_RS09255 (ACOB85_09255) | aroB | 325036..326136 (+) | 1101 | WP_005381318.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 22376.89 Da Isoelectric Point: 7.4658
>NTDB_id=1111366 ACOB85_RS09230 WP_005381323.1 320860..321435(+) (pilN) [Vibrio alginolyticus strain HoVa25]
MLYRINLLPWRENQREEHRRRFISLVALGMLVAVGIQWGIGKFFEYQQDQQQERLDYLTHYIAELDQRIEAMKIAEQEHS
KILERLKVVEGLQNGRNKTTEFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPKLATMLDNMERSAKLNDVEMHSIV
HGKARFGKEFQTFKVSFMFKVTEKKLEAQRG
MLYRINLLPWRENQREEHRRRFISLVALGMLVAVGIQWGIGKFFEYQQDQQQERLDYLTHYIAELDQRIEAMKIAEQEHS
KILERLKVVEGLQNGRNKTTEFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPKLATMLDNMERSAKLNDVEMHSIV
HGKARFGKEFQTFKVSFMFKVTEKKLEAQRG
Nucleotide
Download Length: 576 bp
>NTDB_id=1111366 ACOB85_RS09230 WP_005381323.1 320860..321435(+) (pilN) [Vibrio alginolyticus strain HoVa25]
GTGCTTTATCGCATTAATTTACTTCCTTGGCGAGAGAATCAAAGAGAAGAGCACCGACGTCGTTTCATCAGTTTGGTCGC
ATTAGGTATGTTGGTCGCTGTTGGCATCCAGTGGGGTATTGGAAAGTTTTTTGAGTACCAACAAGATCAACAACAGGAGC
GGCTCGATTACCTCACTCACTACATTGCCGAACTCGACCAGCGTATTGAAGCAATGAAAATTGCAGAGCAAGAGCACAGC
AAAATCCTCGAACGTCTAAAGGTCGTTGAAGGTTTACAAAACGGACGAAACAAAACGACCGAGTTCATGAACTTAATGCC
TGCCGTTATCCCTGAAGGTGTATATGTCGACAAGATCAAAATGAATGATCTGGAAATTGAGATCTCTGGGATCTCAGATA
GCACTCCAAAACTTGCCACGATGCTAGACAACATGGAGCGCTCGGCCAAGTTGAACGACGTAGAAATGCATTCCATCGTT
CACGGCAAAGCCCGTTTTGGGAAAGAGTTTCAAACATTCAAAGTGTCTTTCATGTTCAAAGTAACGGAGAAGAAATTGGA
GGCTCAACGTGGTTGA
GTGCTTTATCGCATTAATTTACTTCCTTGGCGAGAGAATCAAAGAGAAGAGCACCGACGTCGTTTCATCAGTTTGGTCGC
ATTAGGTATGTTGGTCGCTGTTGGCATCCAGTGGGGTATTGGAAAGTTTTTTGAGTACCAACAAGATCAACAACAGGAGC
GGCTCGATTACCTCACTCACTACATTGCCGAACTCGACCAGCGTATTGAAGCAATGAAAATTGCAGAGCAAGAGCACAGC
AAAATCCTCGAACGTCTAAAGGTCGTTGAAGGTTTACAAAACGGACGAAACAAAACGACCGAGTTCATGAACTTAATGCC
TGCCGTTATCCCTGAAGGTGTATATGTCGACAAGATCAAAATGAATGATCTGGAAATTGAGATCTCTGGGATCTCAGATA
GCACTCCAAAACTTGCCACGATGCTAGACAACATGGAGCGCTCGGCCAAGTTGAACGACGTAGAAATGCATTCCATCGTT
CACGGCAAAGCCCGTTTTGGGAAAGAGTTTCAAACATTCAAAGTGTCTTTCATGTTCAAAGTAACGGAGAAGAAATTGGA
GGCTCAACGTGGTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
82.723 |
100 |
0.827 |
| pilN | Vibrio cholerae strain A1552 |
63.277 |
92.67 |
0.586 |