Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACOI2Q_RS03195 Genome accession   NZ_CP184785
Coordinates   707775..708491 (+) Length   238 a.a.
NCBI ID   WP_044735256.1    Uniprot ID   -
Organism   Shewanella algae strain NJT6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 702775..713491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOI2Q_RS03180 (ACOI2Q_03180) - 702972..703322 (-) 351 WP_335901116.1 hypothetical protein -
  ACOI2Q_RS03185 (ACOI2Q_03185) uvrA 703330..706152 (-) 2823 WP_101058423.1 excinuclease ABC subunit UvrA -
  ACOI2Q_RS03190 (ACOI2Q_03190) - 706373..707740 (+) 1368 WP_335901117.1 MFS transporter -
  ACOI2Q_RS03195 (ACOI2Q_03195) ssb 707775..708491 (+) 717 WP_044735256.1 single-stranded DNA-binding protein Machinery gene
  ACOI2Q_RS03200 (ACOI2Q_03200) fdnG 709377..712391 (+) 3015 WP_099049539.1 formate dehydrogenase-N subunit alpha -
  ACOI2Q_RS03205 (ACOI2Q_03205) fdxH 712394..713317 (+) 924 WP_420789381.1 formate dehydrogenase subunit beta -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26172.53 Da        Isoelectric Point: 5.9130

>NTDB_id=1111249 ACOI2Q_RS03195 WP_044735256.1 707775..708491(+) (ssb) [Shewanella algae strain NJT6]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVMFGKLAEIAGEYLRKGSQVYLE
GKLQTRKWKDQSGQDKYTTEVVVDMGGTMQMLGGRNQNQGGMSQGGNQGGMNQGGMNQSQGSYGGGQAQSQSQYNAPQQS
GGYQPKPAQQPQQPQQQYNAPQQQSYGQQQNSGYAPKPQQPAPQQQAAPQQRPAPQPQPQQQNYTPDLDDGWDDDIPF

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1111249 ACOI2Q_RS03195 WP_044735256.1 707775..708491(+) (ssb) [Shewanella algae strain NJT6]
ATGGCCAGTCGTGGTGTTAATAAGGTAATTCTGGTGGGCAATCTGGGACAGGACCCAGAGGTGCGCTACATGCCAAACGG
CAACGCCGTAGCGAATATCACAGTGGCCACCAGTGAGTCATGGAAGGACCAACAGGGCCAACAGCAAGAGCGTACCGAGT
GGCACAGGGTTGTCATGTTCGGCAAGCTGGCTGAAATTGCCGGTGAATATCTGCGCAAAGGCTCGCAAGTGTATCTGGAA
GGCAAACTGCAGACCCGCAAGTGGAAAGATCAGAGCGGTCAGGACAAGTACACCACTGAAGTGGTTGTTGATATGGGCGG
TACCATGCAGATGCTGGGTGGCCGTAACCAAAACCAAGGCGGTATGAGCCAAGGTGGCAATCAGGGCGGTATGAACCAAG
GTGGTATGAACCAAAGCCAAGGTAGTTACGGTGGTGGTCAGGCACAGTCTCAATCTCAATACAATGCGCCACAGCAGTCC
GGCGGCTATCAGCCCAAGCCTGCTCAGCAACCACAACAGCCACAACAGCAGTACAACGCGCCGCAGCAGCAAAGCTATGG
TCAGCAGCAGAACTCAGGTTATGCGCCCAAGCCACAGCAGCCCGCGCCGCAACAACAGGCTGCTCCGCAGCAGCGTCCGG
CACCACAGCCTCAGCCACAACAGCAGAACTACACGCCGGATCTGGATGACGGCTGGGATGATGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.333

100

0.538
  ssb Glaesserella parasuis strain SC1401

46.383

98.739

0.458
  ssb Neisseria gonorrhoeae MS11

42.489

97.899

0.416
  ssb Neisseria meningitidis MC58

41.631

97.899

0.408

Multiple sequence alignment