Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACN8C3_RS13875 Genome accession   NZ_CP184671
Coordinates   2801022..2801558 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli HB101     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2796022..2806558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN8C3_RS13855 (ACN8C3_02883) soxR 2797750..2798214 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  ACN8C3_RS13860 (ACN8C3_02884) soxS 2798300..2798623 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  ACN8C3_RS13865 (ACN8C3_02885) pdeC 2798626..2800212 (-) 1587 WP_001698761.1 c-di-GMP phosphodiesterase PdeC -
  ACN8C3_RS13870 (ACN8C3_02886) yjcB 2800642..2800923 (+) 282 WP_001295689.1 YjcB family protein -
  ACN8C3_RS13875 (ACN8C3_02887) ssb 2801022..2801558 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ACN8C3_RS13880 (ACN8C3_02888) uvrA 2801812..2804634 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  ACN8C3_RS13885 (ACN8C3_02889) yjbR 2804669..2805025 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  ACN8C3_RS13890 (ACN8C3_02890) yjbQ 2805029..2805445 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ACN8C3_RS13895 (ACN8C3_02891) aphA 2805556..2806269 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=1110729 ACN8C3_RS13875 WP_000168305.1 2801022..2801558(-) (ssb) [Escherichia coli HB101]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1110729 ACN8C3_RS13875 WP_000168305.1 2801022..2801558(-) (ssb) [Escherichia coli HB101]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment