Detailed information NTG1110560

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACOC81_RS04905
• Genome accession: NZ_CP184649
• Coordinates: 1027115..1027987 (-)
• Length: 290 a.a.
• NCBI ID: WP_122439229.1
• Uniprot ID: -
• Organism: Pseudomonas viridiflava strain p21.B10
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1022115..1032987

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACOC81_RS04870 (ACOC81_04870)	-	1022582..1023880 (-)	1299	WP_004884087.1	NAD(P)/FAD-dependent oxidoreductase	-
ACOC81_RS04875 (ACOC81_04875)	-	1023944..1024117 (-)	174	WP_069145033.1	DUF3094 family protein	-
ACOC81_RS04880 (ACOC81_04880)	-	1024131..1024676 (-)	546	WP_122439232.1	MOSC domain-containing protein	-
ACOC81_RS04885 (ACOC81_04885)	-	1024673..1025302 (-)	630	WP_004884092.1	DUF1780 domain-containing protein	-
ACOC81_RS04890 (ACOC81_04890)	-	1025427..1025888 (+)	462	WP_069145034.1	hypothetical protein	-
ACOC81_RS04895 (ACOC81_04895)	yacG	1026289..1026498 (-)	210	WP_122439230.1	DNA gyrase inhibitor YacG	-
ACOC81_RS04900 (ACOC81_04900)	coaE	1026495..1027118 (-)	624	WP_025993968.1	dephospho-CoA kinase	-
ACOC81_RS04905 (ACOC81_04905)	pilD	1027115..1027987 (-)	873	WP_122439229.1	prepilin peptidase	Machinery gene
ACOC81_RS04910 (ACOC81_04910)	pilC	1027989..1029206 (-)	1218	WP_004887449.1	type II secretion system F family protein	Machinery gene
ACOC81_RS04915 (ACOC81_04915)	pilB	1029209..1030909 (-)	1701	WP_004887450.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACOC81_RS04920 (ACOC81_04920)	-	1031136..1031558 (+)	423	WP_004887452.1	pilin	-
ACOC81_RS04930 (ACOC81_04930)	-	1031753..1032733 (-)	981	WP_122447119.1	YiiG family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32017.17 Da
• Isoelectric Point: 7.2175

>NTDB_id=1110560 ACOC81_RS04905 WP_122439229.1 1027115..1027987(-) (pilD) [Pseudomonas viridiflava strain p21.B10]
MPLLDFLASSTLAFVIFIGVLGLLIGSFLNVVVYRLPKMMENDWKAQSREMLGLPAEPEQPTFNLILPHSRCPHCAHQIR
PWENLPVVSYLMLGGKCSQCKAPISKRYPLVELVCAVLSAYVAWHFGFCWQTAAMLVLSWGLLAMSLIDADTQLLPDSLV
LPLMWLGLIVNAFGLFTSLSDALWGAVTGYLSLWSVFWLFKLITGKEGMGYGDFKLLAMLGAWGGWQILPQTILLSSLVG
AILGVIMMRLRNVESGTPIPFGPYLAIAGWIALLWGGQITDSYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=1110560 ACOC81_RS04905 WP_122439229.1 1027115..1027987(-) (pilD) [Pseudomonas viridiflava strain p21.B10]
ATGCCCCTCCTCGACTTCCTGGCCAGCTCAACGCTGGCCTTCGTTATTTTCATCGGCGTACTAGGCCTCCTGATCGGAAG
CTTCCTCAACGTCGTAGTCTACCGCTTACCCAAAATGATGGAGAACGACTGGAAAGCCCAGTCTCGTGAAATGCTCGGCC
TGCCCGCCGAGCCTGAACAGCCCACCTTCAACCTGATCCTCCCCCACTCCCGCTGCCCCCACTGCGCGCATCAGATCCGT
CCCTGGGAAAACCTGCCGGTGGTCAGCTACCTGATGCTTGGCGGCAAGTGTTCGCAATGCAAGGCTCCGATCAGCAAGCG
CTATCCGCTGGTCGAACTGGTCTGTGCGGTGTTGTCGGCCTATGTGGCCTGGCATTTCGGCTTTTGCTGGCAGACGGCAG
CAATGCTGGTGCTGAGTTGGGGCTTGCTGGCGATGAGCCTGATAGACGCCGACACCCAGCTGCTGCCGGACTCACTGGTA
CTGCCGTTGATGTGGCTGGGCCTGATCGTCAACGCATTTGGTCTGTTCACGTCGTTAAGCGACGCTTTGTGGGGTGCCGT
GACGGGGTATCTGTCGTTGTGGTCGGTGTTCTGGCTGTTCAAGCTGATCACAGGCAAGGAAGGCATGGGCTACGGCGACT
TCAAACTGCTGGCCATGCTCGGGGCGTGGGGCGGCTGGCAGATCCTGCCGCAGACGATCCTTCTGTCGTCGCTGGTGGGT
GCCATTCTTGGCGTGATCATGATGCGATTGCGCAATGTCGAATCCGGTACTCCGATCCCCTTCGGTCCTTATCTGGCCAT
CGCGGGGTGGATCGCTTTGCTCTGGGGTGGTCAAATAACCGACTCCTATTTGCAGTTTGCCGGTTTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	54.212	94.138	0.51
pilD	Vibrio cholerae strain A1552	53.846	94.138	0.507
pilD	Acinetobacter baumannii D1279779	50.871	98.966	0.503
pilD	Acinetobacter nosocomialis M2	50.174	98.966	0.497
pilD	Neisseria gonorrhoeae MS11	52.362	87.586	0.459