Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACOBWA_RS13250 Genome accession   NZ_CP184640
Coordinates   2844208..2845263 (-) Length   351 a.a.
NCBI ID   WP_420229628.1    Uniprot ID   -
Organism   Psychrobacter sp. ER1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2839208..2850263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOBWA_RS13230 (ACOBWA_13240) pilQ 2839928..2842279 (-) 2352 WP_420229625.1 type IV pilus secretin PilQ -
  ACOBWA_RS13235 (ACOBWA_13245) - 2842307..2842840 (-) 534 WP_420229626.1 pilus assembly protein PilP -
  ACOBWA_RS13240 (ACOBWA_13250) - 2842840..2843409 (-) 570 WP_420229627.1 type 4a pilus biogenesis protein PilO -
  ACOBWA_RS13245 (ACOBWA_13255) - 2843555..2844208 (-) 654 WP_165598122.1 PilN domain-containing protein -
  ACOBWA_RS13250 (ACOBWA_13260) comM 2844208..2845263 (-) 1056 WP_420229628.1 type IV pilus assembly protein PilM Machinery gene
  ACOBWA_RS13255 (ACOBWA_13265) - 2845457..2848093 (+) 2637 WP_420229629.1 penicillin-binding protein 1A -
  ACOBWA_RS13260 (ACOBWA_13270) - 2848253..2848777 (-) 525 WP_420229630.1 DUF6586 family protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 38201.42 Da        Isoelectric Point: 4.3824

>NTDB_id=1110398 ACOBWA_RS13250 WP_420229628.1 2844208..2845263(-) (comM) [Psychrobacter sp. ER1]
MRLFTSKSRHLIGVDICATSVKLVDIQRQQGMFHLKSYGIERLPEGIVVDKILVDTEAAGNIITSLARRCQVAGSNAATA
VSGSAVITKIIDMDMTLSDVEREAQIRLDADQYVPYPLEDVNLDFEVLGPSLVSEDMVQVLLAASRSENVDQRVDALAFG
GLQTKVMDIESHAIERAFGLMVDSLPNVPELVALVDIGHNQTTLYIAKNGEFIYSREQLFGGAQLTEAIQNRYGLSAEEA
TLSKRERTLPDDYYPEVMTPFIENTIQQITRSLQFYFSSSQYSSIDHVVLAGGSSSIAGLAGMAQQKLGVTVSVANPFTN
MTIAPNIDNEQLAVDAPSLMAACGLALRSFD

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=1110398 ACOBWA_RS13250 WP_420229628.1 2844208..2845263(-) (comM) [Psychrobacter sp. ER1]
GTGAGGCTATTTACTTCCAAAAGTCGACATTTGATTGGCGTGGATATTTGTGCCACTTCAGTAAAGTTGGTTGACATACA
GCGTCAGCAAGGCATGTTTCACCTAAAATCTTATGGTATTGAAAGACTACCGGAAGGTATCGTGGTTGATAAGATTCTAG
TGGATACAGAAGCTGCCGGTAATATTATAACGAGCTTGGCAAGACGCTGCCAAGTCGCAGGTAGCAATGCTGCGACCGCT
GTTTCTGGCTCTGCAGTGATTACTAAAATCATTGATATGGATATGACACTTAGCGATGTAGAGCGTGAGGCGCAAATACG
TTTGGATGCTGACCAGTATGTGCCTTATCCATTAGAAGACGTCAATCTAGATTTTGAAGTATTAGGACCGTCTTTAGTTA
GTGAAGATATGGTTCAGGTATTGCTTGCTGCTTCTCGCTCAGAGAACGTTGACCAGCGTGTCGATGCTTTAGCCTTTGGT
GGACTACAAACGAAAGTCATGGATATCGAATCTCATGCAATCGAGCGTGCGTTTGGATTGATGGTAGATAGTCTACCAAA
TGTACCCGAACTAGTAGCATTGGTAGATATCGGCCATAATCAGACCACATTATATATTGCCAAGAATGGCGAGTTTATTT
ATAGTCGTGAGCAGTTATTTGGCGGTGCTCAGCTGACCGAGGCAATACAAAATCGCTATGGCCTATCAGCAGAAGAAGCG
ACACTAAGCAAACGCGAACGTACCTTACCTGATGATTACTATCCTGAAGTAATGACCCCTTTTATAGAAAATACCATTCA
ACAAATCACTCGCTCTTTACAGTTTTATTTCTCATCAAGTCAATATAGCAGTATCGATCATGTAGTGCTTGCAGGAGGCA
GCAGTTCTATTGCAGGTCTCGCTGGTATGGCACAACAAAAGCTGGGTGTAACTGTCAGTGTTGCCAACCCTTTTACCAAT
ATGACTATTGCACCAAATATCGATAATGAGCAACTGGCGGTTGATGCGCCAAGCTTAATGGCTGCATGCGGTCTTGCGTT
AAGGAGCTTTGACTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

50.427

100

0.504
  pilM Acinetobacter baumannii D1279779

49.858

100

0.499
  comM Acinetobacter baylyi ADP1

47.863

100

0.479
  pilM Legionella pneumophila strain ERS1305867

40.227

100

0.405

Multiple sequence alignment