Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACOBWA_RS11955 Genome accession   NZ_CP184640
Coordinates   2573787..2574410 (-) Length   207 a.a.
NCBI ID   WP_101204383.1    Uniprot ID   -
Organism   Psychrobacter sp. ER1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2568787..2579410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOBWA_RS11930 (ACOBWA_11940) - 2569569..2570474 (-) 906 WP_420229478.1 type II secretion system protein N -
  ACOBWA_RS11935 (ACOBWA_11945) - 2570475..2570666 (-) 192 WP_420229479.1 hypothetical protein -
  ACOBWA_RS11940 (ACOBWA_11950) gspN 2570707..2571300 (-) 594 WP_420229480.1 type II secretion system protein N -
  ACOBWA_RS11945 (ACOBWA_11955) - 2571529..2571852 (-) 324 WP_101204384.1 H-NS family nucleoid-associated regulatory protein -
  ACOBWA_RS11950 (ACOBWA_11960) - 2572395..2573176 (+) 782 Protein_2346 IS630 family transposase -
  ACOBWA_RS11955 (ACOBWA_11965) ssb 2573787..2574410 (-) 624 WP_101204383.1 single-stranded DNA-binding protein Machinery gene
  ACOBWA_RS11960 (ACOBWA_11970) - 2574747..2575133 (-) 387 WP_420229481.1 DUF3833 family protein -
  ACOBWA_RS11965 (ACOBWA_11975) - 2575465..2576828 (-) 1364 Protein_2349 MFS transporter -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22480.32 Da        Isoelectric Point: 6.4792

>NTDB_id=1110394 ACOBWA_RS11955 WP_101204383.1 2573787..2574410(-) (ssb) [Psychrobacter sp. ER1]
MRGVNKVIIIGNLGADPEARQFSNGGSVTNISVATSEQWTDKQSGEKREATEWHRIALFNRLGEIAAQYLRKGSKVYIEG
SLRTRKYQDQSGQDRYITEIRAEQMQMLDGQTGGGQGGDSFGGQNQGQSGGYNNQGGQNNQNNFGQQANNQMAHQGGYNQ
PAAQGGQNSFNNQAPAQQNQFNQPAQKPAQSKPTAMPDGPVDDDIPF

Nucleotide


Download         Length: 624 bp        

>NTDB_id=1110394 ACOBWA_RS11955 WP_101204383.1 2573787..2574410(-) (ssb) [Psychrobacter sp. ER1]
ATGCGCGGAGTCAATAAAGTTATCATCATCGGTAACCTCGGAGCAGATCCTGAGGCACGCCAATTTAGCAATGGCGGTAG
CGTGACCAATATCTCGGTTGCGACATCAGAGCAGTGGACAGACAAACAAAGCGGCGAAAAAAGAGAAGCGACAGAGTGGC
ATCGTATCGCACTTTTTAACCGTCTAGGTGAAATCGCAGCGCAATACCTGCGTAAAGGCAGCAAGGTTTATATCGAAGGT
AGTTTGCGTACACGTAAATACCAAGACCAAAGTGGTCAAGACCGTTATATTACTGAGATTCGTGCTGAACAAATGCAGAT
GCTCGATGGTCAAACTGGCGGTGGTCAAGGTGGAGATAGCTTTGGTGGTCAAAACCAAGGTCAAAGTGGCGGCTATAATA
ATCAAGGTGGTCAAAACAACCAGAATAACTTTGGTCAGCAAGCAAATAATCAGATGGCACATCAAGGCGGCTACAATCAA
CCAGCGGCTCAAGGTGGGCAGAATAGCTTTAACAATCAGGCGCCTGCTCAGCAAAATCAATTCAATCAGCCAGCACAGAA
ACCTGCACAATCTAAGCCTACAGCAATGCCAGACGGCCCTGTAGATGATGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.885

100

0.531
  ssb Vibrio cholerae strain A1552

46.919

100

0.478
  ssb Neisseria meningitidis MC58

40.686

98.551

0.401
  ssb Neisseria gonorrhoeae MS11

40.686

98.551

0.401

Multiple sequence alignment