Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | ACOCI8_RS05970 | Genome accession | NZ_CP184563 |
| Coordinates | 1225543..1226013 (+) | Length | 156 a.a. |
| NCBI ID | WP_096002306.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain SCTW2018065 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1202834..1255663 | 1225543..1226013 | within | 0 |
Gene organization within MGE regions
Location: 1202834..1255663
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACOCI8_RS05810 (ACOCI8_05810) | groES | 1202834..1203118 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| ACOCI8_RS05815 (ACOCI8_05815) | groL | 1203194..1204810 (+) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| ACOCI8_RS05820 (ACOCI8_05820) | - | 1205351..1205530 (+) | 180 | WP_000201398.1 | hypothetical protein | - |
| ACOCI8_RS05825 (ACOCI8_05825) | - | 1205527..1206153 (+) | 627 | WP_000216896.1 | hypothetical protein | - |
| ACOCI8_RS05830 (ACOCI8_05830) | - | 1206692..1207999 (-) | 1308 | WP_001045074.1 | TrkH family potassium uptake protein | - |
| ACOCI8_RS05835 (ACOCI8_05835) | - | 1208382..1209605 (-) | 1224 | WP_000206618.1 | ArgE/DapE family deacylase | - |
| ACOCI8_RS05840 (ACOCI8_05840) | - | 1210037..1211092 (+) | 1056 | WP_000791397.1 | leukocidin family pore-forming toxin | - |
| ACOCI8_RS05845 (ACOCI8_05845) | - | 1211114..1212130 (+) | 1017 | WP_000595612.1 | leukocidin/hemolysin toxin family protein | - |
| ACOCI8_RS05850 (ACOCI8_05850) | sph | 1212392..1213218 (-) | 827 | Protein_1148 | sphingomyelin phosphodiesterase | - |
| ACOCI8_RS05855 (ACOCI8_05855) | - | 1213275..1214312 (-) | 1038 | WP_000857200.1 | tyrosine-type recombinase/integrase | - |
| ACOCI8_RS05860 (ACOCI8_05860) | - | 1214505..1215209 (-) | 705 | WP_017804779.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| ACOCI8_RS05865 (ACOCI8_05865) | - | 1215349..1215516 (-) | 168 | WP_000694771.1 | hypothetical protein | - |
| ACOCI8_RS05870 (ACOCI8_05870) | - | 1215720..1216061 (-) | 342 | WP_000591749.1 | hypothetical protein | - |
| ACOCI8_RS05875 (ACOCI8_05875) | - | 1216067..1216999 (-) | 933 | WP_096002309.1 | exonuclease domain-containing protein | - |
| ACOCI8_RS05880 (ACOCI8_05880) | - | 1217015..1217728 (-) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| ACOCI8_RS05885 (ACOCI8_05885) | - | 1217691..1217865 (+) | 175 | Protein_1155 | transcriptional regulator | - |
| ACOCI8_RS05890 (ACOCI8_05890) | - | 1217862..1218125 (+) | 264 | WP_000854072.1 | helix-turn-helix transcriptional regulator | - |
| ACOCI8_RS05895 (ACOCI8_05895) | - | 1218141..1218356 (+) | 216 | WP_001025404.1 | Thoeris anti-defense Tad2 family protein | - |
| ACOCI8_RS05900 (ACOCI8_05900) | - | 1218345..1218674 (-) | 330 | WP_000128907.1 | hypothetical protein | - |
| ACOCI8_RS05905 (ACOCI8_05905) | - | 1218725..1219477 (+) | 753 | WP_096002308.1 | phage antirepressor KilAC domain-containing protein | - |
| ACOCI8_RS05910 (ACOCI8_05910) | - | 1219490..1219750 (+) | 261 | WP_000435343.1 | hypothetical protein | - |
| ACOCI8_RS05915 (ACOCI8_05915) | - | 1219774..1219929 (-) | 156 | Protein_1161 | hypothetical protein | - |
| ACOCI8_RS05920 (ACOCI8_05920) | - | 1219984..1220310 (+) | 327 | WP_001025595.1 | hypothetical protein | - |
| ACOCI8_RS05925 (ACOCI8_05925) | - | 1220307..1220406 (+) | 100 | Protein_1163 | hypothetical protein | - |
| ACOCI8_RS05930 (ACOCI8_05930) | - | 1220555..1220878 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| ACOCI8_RS05935 (ACOCI8_05935) | - | 1220875..1221036 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| ACOCI8_RS05940 (ACOCI8_05940) | - | 1221131..1221433 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| ACOCI8_RS05945 (ACOCI8_05945) | - | 1221438..1221698 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| ACOCI8_RS05950 (ACOCI8_05950) | - | 1221707..1221970 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| ACOCI8_RS05955 (ACOCI8_05955) | - | 1221979..1223922 (+) | 1944 | WP_096002307.1 | AAA family ATPase | - |
| ACOCI8_RS05960 (ACOCI8_05960) | - | 1223924..1224844 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| ACOCI8_RS05965 (ACOCI8_05965) | - | 1224925..1225542 (+) | 618 | WP_078065545.1 | MBL fold metallo-hydrolase | - |
| ACOCI8_RS05970 (ACOCI8_05970) | ssbA | 1225543..1226013 (+) | 471 | WP_096002306.1 | single-stranded DNA-binding protein | Machinery gene |
| ACOCI8_RS05975 (ACOCI8_05975) | - | 1226043..1226894 (+) | 852 | WP_164097226.1 | DnaD domain protein | - |
| ACOCI8_RS05980 (ACOCI8_05980) | - | 1226901..1227119 (+) | 219 | WP_000338530.1 | hypothetical protein | - |
| ACOCI8_RS05985 (ACOCI8_05985) | - | 1227128..1227531 (+) | 404 | Protein_1175 | RusA family crossover junction endodeoxyribonuclease | - |
| ACOCI8_RS05990 (ACOCI8_05990) | - | 1227544..1227912 (+) | 369 | WP_096002305.1 | SA1788 family PVL leukocidin-associated protein | - |
| ACOCI8_RS05995 (ACOCI8_05995) | - | 1227916..1228158 (+) | 243 | WP_096002304.1 | phi PVL orf 51-like protein | - |
| ACOCI8_RS06000 (ACOCI8_06000) | - | 1228173..1228421 (+) | 249 | WP_096002303.1 | DUF1024 family protein | - |
| ACOCI8_RS06005 (ACOCI8_06005) | - | 1228414..1228947 (+) | 534 | WP_096002302.1 | dUTP diphosphatase | - |
| ACOCI8_RS06010 (ACOCI8_06010) | - | 1228984..1229229 (+) | 246 | WP_001282074.1 | hypothetical protein | - |
| ACOCI8_RS06015 (ACOCI8_06015) | - | 1229226..1229414 (+) | 189 | WP_000195782.1 | DUF1381 domain-containing protein | - |
| ACOCI8_RS06020 (ACOCI8_06020) | - | 1229389..1229589 (+) | 201 | WP_001125015.1 | hypothetical protein | - |
| ACOCI8_RS06025 (ACOCI8_06025) | rinB | 1229592..1229741 (+) | 150 | WP_000237868.1 | transcriptional activator RinB | - |
| ACOCI8_RS06030 (ACOCI8_06030) | - | 1229900..1230550 (+) | 651 | WP_001005262.1 | hypothetical protein | - |
| ACOCI8_RS06035 (ACOCI8_06035) | - | 1230550..1230750 (+) | 201 | WP_000265042.1 | DUF1514 family protein | - |
| ACOCI8_RS06040 (ACOCI8_06040) | - | 1230778..1231194 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| ACOCI8_RS06045 (ACOCI8_06045) | - | 1231426..1231725 (+) | 300 | WP_000988332.1 | HNH endonuclease | - |
| ACOCI8_RS06050 (ACOCI8_06050) | - | 1231856..1232200 (+) | 345 | WP_000402904.1 | hypothetical protein | - |
| ACOCI8_RS06055 (ACOCI8_06055) | - | 1232197..1233858 (+) | 1662 | WP_000625088.1 | terminase large subunit | - |
| ACOCI8_RS06060 (ACOCI8_06060) | - | 1233874..1235061 (+) | 1188 | WP_000025274.1 | phage portal protein | - |
| ACOCI8_RS06065 (ACOCI8_06065) | - | 1235045..1235782 (+) | 738 | WP_096002301.1 | head maturation protease, ClpP-related | - |
| ACOCI8_RS06070 (ACOCI8_06070) | - | 1235806..1236951 (+) | 1146 | WP_000154559.1 | phage major capsid protein | - |
| ACOCI8_RS06075 (ACOCI8_06075) | - | 1236971..1237254 (+) | 284 | Protein_1193 | hypothetical protein | - |
| ACOCI8_RS06080 (ACOCI8_06080) | - | 1237244..1237528 (+) | 285 | WP_000150936.1 | phage head-tail adapter protein | - |
| ACOCI8_RS06085 (ACOCI8_06085) | - | 1237512..1237874 (+) | 363 | WP_000755150.1 | head-tail adaptor protein | - |
| ACOCI8_RS06090 (ACOCI8_06090) | - | 1237871..1238275 (+) | 405 | WP_000114226.1 | HK97 gp10 family phage protein | - |
| ACOCI8_RS06095 (ACOCI8_06095) | - | 1238272..1238679 (+) | 408 | WP_000565498.1 | hypothetical protein | - |
| ACOCI8_RS06100 (ACOCI8_06100) | - | 1238680..1239324 (+) | 645 | WP_000268735.1 | major tail protein | - |
| ACOCI8_RS06105 (ACOCI8_06105) | - | 1239360..1239590 (+) | 231 | Protein_1199 | Ig-like domain-containing protein | - |
| ACOCI8_RS06110 (ACOCI8_06110) | gpG | 1239640..1239990 (+) | 351 | WP_001096355.1 | phage tail assembly chaperone G | - |
| ACOCI8_RS06115 (ACOCI8_06115) | gpGT | 1240041..1240178 (+) | 138 | WP_001549167.1 | phage tail assembly chaperone GT | - |
| ACOCI8_RS06120 (ACOCI8_06120) | - | 1240235..1244746 (+) | 4512 | WP_096002300.1 | phage tail tape measure protein | - |
| ACOCI8_RS06125 (ACOCI8_06125) | - | 1244743..1246227 (+) | 1485 | WP_000567408.1 | phage distal tail protein | - |
| ACOCI8_RS06130 (ACOCI8_06130) | - | 1246243..1250028 (+) | 3786 | WP_096777926.1 | phage tail spike protein | - |
| ACOCI8_RS06135 (ACOCI8_06135) | - | 1250018..1250170 (+) | 153 | WP_001153681.1 | hypothetical protein | - |
| ACOCI8_RS06140 (ACOCI8_06140) | - | 1250217..1250504 (+) | 288 | WP_001040261.1 | hypothetical protein | - |
| ACOCI8_RS06145 (ACOCI8_06145) | - | 1250562..1250858 (+) | 297 | WP_000539688.1 | DUF2951 domain-containing protein | - |
| ACOCI8_RS06150 (ACOCI8_06150) | pepG1 | 1251050..1251184 (+) | 135 | WP_000226108.1 | type I toxin-antitoxin system toxin PepG1 | - |
| ACOCI8_RS06155 (ACOCI8_06155) | - | 1251237..1251344 (-) | 108 | WP_001791821.1 | hypothetical protein | - |
| ACOCI8_RS06160 (ACOCI8_06160) | - | 1251396..1251650 (+) | 255 | WP_000611512.1 | phage holin | - |
| ACOCI8_RS06165 (ACOCI8_06165) | - | 1251662..1252417 (+) | 756 | WP_000861038.1 | CHAP domain-containing protein | - |
| ACOCI8_RS06170 (ACOCI8_06170) | sak | 1252608..1253099 (+) | 492 | WP_000919350.1 | staphylokinase | - |
| ACOCI8_RS06175 (ACOCI8_06175) | - | 1253746..1254084 (+) | 339 | Protein_1213 | SH3 domain-containing protein | - |
| ACOCI8_RS06180 (ACOCI8_06180) | - | 1254179..1254628 (-) | 450 | WP_000727649.1 | chemotaxis-inhibiting protein CHIPS | - |
| ACOCI8_RS06185 (ACOCI8_06185) | scn | 1255313..1255663 (+) | 351 | WP_000702263.1 | complement inhibitor SCIN-A | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17657.52 Da Isoelectric Point: 5.2672
>NTDB_id=1109573 ACOCI8_RS05970 WP_096002306.1 1225543..1226013(+) (ssbA) [Staphylococcus aureus strain SCTW2018065]
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINVIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINVIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=1109573 ACOCI8_RS05970 WP_096002306.1 1225543..1226013(+) (ssbA) [Staphylococcus aureus strain SCTW2018065]
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTTACATTAGCAGTTAACCGTACATTTACGAATGCACAAGGCGAGCGCGAGGCAGATTTTATTAATGTCATTGTAT
TTAAAAAACAAGCAGAGAATGTAAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTTACATTAGCAGTTAACCGTACATTTACGAATGCACAAGGCGAGCGCGAGGCAGATTTTATTAATGTCATTGTAT
TTAAAAAACAAGCAGAGAATGTAAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
54.802 |
100 |
0.622 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.176 |
100 |
0.558 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Vibrio cholerae strain A1552 |
31.492 |
100 |
0.365 |