Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACKTSO_RS11855 Genome accession   NZ_AP035889
Coordinates   2447626..2448141 (+) Length   171 a.a.
NCBI ID   WP_018347305.1    Uniprot ID   A0A0A3A3X9
Organism   Gallibacterium anatis strain SMUHGa01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2442626..2453141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKTSO_RS11840 (SMUG_23030) - 2442855..2443376 (-) 522 WP_407902543.1 transposase -
  ACKTSO_RS11845 (SMUG_23040) - 2443558..2444136 (-) 579 WP_407902544.1 hypothetical protein -
  ACKTSO_RS11850 (SMUG_23050) uvrA 2444650..2447484 (-) 2835 WP_039146485.1 excinuclease ABC subunit UvrA -
  ACKTSO_RS11855 (SMUG_23060) ssb 2447626..2448141 (+) 516 WP_018347305.1 single-stranded DNA-binding protein Machinery gene
  ACKTSO_RS11860 (SMUG_23070) - 2448237..2448779 (-) 543 WP_080735110.1 LysR substrate-binding domain-containing protein -
  ACKTSO_RS11865 (SMUG_23080) - 2448810..2449247 (+) 438 Protein_2296 amidophosphoribosyltransferase -
  ACKTSO_RS11870 (SMUG_23090) - 2449247..2449822 (+) 576 WP_021462090.1 UbiX family flavin prenyltransferase -
  ACKTSO_RS11875 (SMUG_23100) - 2450186..2450596 (+) 411 WP_021462089.1 DUF805 domain-containing protein -
  ACKTSO_RS11880 (SMUG_23110) - 2450727..2451794 (+) 1068 WP_021462088.1 DarT ssDNA thymidine ADP-ribosyltransferase family protein -
  ACKTSO_RS11885 (SMUG_23120) - 2451806..2452519 (+) 714 WP_021462087.1 DUF6977 family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19146.28 Da        Isoelectric Point: 4.9833

>NTDB_id=110905 ACKTSO_RS11855 WP_018347305.1 2447626..2448141(+) (ssb) [Gallibacterium anatis strain SMUHGa01]
MAGVNKVIIVGNLGNDPELRTFANGDAVANISVATSERWQDKQSGEWREITEWHRIVLFRRLAEIAGQYLRKGSKVYIEG
KLRTRKWQDQNGQDRYTTEIQADTLQMLDSRSDRMGADMSAPMAQPQNQFAQPSYNQAAAQPNQFAQPAAAKAPQAAVNP
DTADFDDDMPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=110905 ACKTSO_RS11855 WP_018347305.1 2447626..2448141(+) (ssb) [Gallibacterium anatis strain SMUHGa01]
ATGGCAGGCGTTAATAAAGTAATTATTGTGGGAAATTTGGGAAATGATCCTGAATTGAGAACCTTTGCAAATGGCGATGC
GGTCGCCAATATCAGTGTTGCCACCAGTGAACGCTGGCAAGACAAACAGAGCGGAGAATGGCGTGAAATTACTGAATGGC
ACCGTATTGTTTTATTCCGCCGTTTAGCAGAGATTGCCGGACAATATTTGCGTAAAGGATCAAAAGTTTATATAGAAGGC
AAATTACGCACGCGTAAATGGCAGGATCAAAACGGGCAAGATCGTTACACCACCGAAATTCAAGCGGACACATTACAAAT
GTTGGACAGTCGCAGCGATCGTATGGGCGCGGATATGTCTGCACCAATGGCTCAACCGCAAAATCAGTTTGCGCAACCGT
CTTATAATCAAGCGGCAGCTCAACCTAACCAATTCGCTCAACCGGCAGCCGCCAAAGCACCGCAAGCAGCGGTAAATCCG
GATACTGCGGATTTTGATGATGATATGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A3A3X9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

64.286

100

0.684
  ssb Vibrio cholerae strain A1552

52

100

0.532
  ssb Neisseria meningitidis MC58

42.938

100

0.444
  ssb Neisseria gonorrhoeae MS11

43.103

100

0.439

Multiple sequence alignment