Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   ACKTSO_RS09515 Genome accession   NZ_AP035889
Coordinates   1957401..1957730 (+) Length   109 a.a.
NCBI ID   WP_039086546.1    Uniprot ID   -
Organism   Gallibacterium anatis strain SMUHGa01     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1952401..1962730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKTSO_RS09500 (SMUG_18660) galU 1953231..1954118 (+) 888 WP_094933019.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ACKTSO_RS09505 (SMUG_18670) glpT 1954465..1955922 (+) 1458 WP_210641015.1 glycerol-3-phosphate transporter -
  ACKTSO_RS09510 (SMUG_18680) glpQ 1956114..1957208 (+) 1095 WP_407902420.1 glycerophosphodiester phosphodiesterase -
  ACKTSO_RS09515 (SMUG_18690) comEA/comE1 1957401..1957730 (+) 330 WP_039086546.1 helix-hairpin-helix domain-containing protein Machinery gene
  ACKTSO_RS09520 (SMUG_18700) fis 1957812..1958108 (-) 297 WP_013746362.1 DNA-binding transcriptional regulator Fis -
  ACKTSO_RS09525 (SMUG_18710) dusB 1958137..1959111 (-) 975 WP_407902421.1 tRNA dihydrouridine synthase DusB -
  ACKTSO_RS09530 (SMUG_18720) - 1959439..1962477 (+) 3039 WP_407902422.1 glycoside hydrolase family 2 TIM barrel-domain containing protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11557.19 Da        Isoelectric Point: 7.2029

>NTDB_id=110898 ACKTSO_RS09515 WP_039086546.1 1957401..1957730(+) (comEA/comE1) [Gallibacterium anatis strain SMUHGa01]
MKLKHLFALTFGSLALLSGSVAVAESANPPPATETAQLQQAAQSDKVNLNNATADQLQKGLVGIGAKKAQAIVEYREQHG
PFVSVEQITEVKGIGSAIFEKNKDRLAIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=110898 ACKTSO_RS09515 WP_039086546.1 1957401..1957730(+) (comEA/comE1) [Gallibacterium anatis strain SMUHGa01]
ATGAAATTAAAACATTTATTTGCGTTAACTTTCGGTTCACTAGCACTGTTGTCCGGTTCGGTTGCGGTAGCGGAAAGCGC
CAATCCGCCGCCGGCAACTGAAACGGCACAACTCCAACAGGCGGCACAGAGCGACAAAGTGAATCTGAATAATGCTACTG
CTGATCAGCTACAAAAAGGCTTGGTCGGCATTGGTGCGAAAAAGGCACAGGCGATTGTCGAGTATCGTGAGCAGCACGGG
CCGTTTGTTTCTGTGGAACAGATTACCGAAGTAAAAGGAATCGGTTCAGCTATTTTTGAAAAAAATAAAGATCGTCTAGC
GATTGAATGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

47.748

100

0.486
  comE1/comEA Haemophilus influenzae Rd KW20

47.273

100

0.477
  comEA Acinetobacter baylyi ADP1

39.535

100

0.468

Multiple sequence alignment