Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACN079_RS14670 Genome accession   NZ_CP184478
Coordinates   3218926..3219453 (-) Length   175 a.a.
NCBI ID   WP_420235294.1    Uniprot ID   -
Organism   Pseudomonas sp. ABY48     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3213926..3224453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN079_RS14655 (ACN079_14655) - 3214067..3216070 (-) 2004 WP_420235291.1 integrase -
  ACN079_RS14660 (ACN079_14660) - 3216063..3217580 (-) 1518 WP_420235292.1 site-specific integrase -
  ACN079_RS14665 (ACN079_14665) - 3217573..3218784 (-) 1212 WP_420235293.1 site-specific integrase -
  ACN079_RS14670 (ACN079_14670) ssb 3218926..3219453 (-) 528 WP_420235294.1 single-stranded DNA-binding protein Machinery gene
  ACN079_RS14675 (ACN079_14675) - 3219463..3220860 (-) 1398 WP_420235295.1 MFS transporter -
  ACN079_RS14680 (ACN079_14680) uvrA 3221040..3223874 (+) 2835 WP_420235296.1 excinuclease ABC subunit UvrA -
  ACN079_RS14685 (ACN079_14685) bfr 3223970..3224434 (-) 465 WP_058543338.1 bacterioferritin -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19480.68 Da        Isoelectric Point: 5.9455

>NTDB_id=1108416 ACN079_RS14670 WP_420235294.1 3218926..3219453(-) (ssb) [Pseudomonas sp. ABY48]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQQGGNNYQQSAPAPRQQAPRPQSAPQPQPQRERPAPQQAAP
QPAADFDSFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1108416 ACN079_RS14670 WP_420235294.1 3218926..3219453(-) (ssb) [Pseudomonas sp. ABY48]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCGAACGGCAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAGCAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAGACCGAAT
GGCACCGCGTGTCGATGTTCGGCAAAGTGGCTGAGATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAG
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGCTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACCAGCAACAAGGTGGCAACAACTACCAGCAGTCGGCTCCGGCCCCGC
GTCAGCAGGCGCCTCGTCCGCAGTCCGCTCCACAACCACAACCACAACGCGAACGCCCGGCCCCACAACAGGCCGCGCCG
CAACCGGCTGCGGATTTCGACAGCTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.425

100

0.577
  ssb Glaesserella parasuis strain SC1401

46.114

100

0.509
  ssb Neisseria meningitidis MC58

46.927

100

0.48
  ssb Neisseria gonorrhoeae MS11

46.369

100

0.474

Multiple sequence alignment