Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   ID09_RS02095 Genome accession   NZ_CP008921
Coordinates   416602..417267 (+) Length   221 a.a.
NCBI ID   WP_023369493.1    Uniprot ID   -
Organism   Streptococcus suis 6407     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 411602..422267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID09_RS02070 (ID09_02095) - 411814..413214 (+) 1401 WP_024381714.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  ID09_RS02075 (ID09_02100) - 413216..413587 (+) 372 WP_024381713.1 S1 RNA-binding domain-containing protein -
  ID09_RS02080 (ID09_02105) cysK 413613..414539 (-) 927 WP_002937015.1 cysteine synthase A -
  ID09_RS02085 (ID09_02110) - 414628..415260 (-) 633 WP_023369489.1 YigZ family protein -
  ID09_RS02090 (ID09_02115) comFA/cflA 415317..416609 (+) 1293 WP_024390587.1 DEAD/DEAH box helicase Machinery gene
  ID09_RS02095 (ID09_02120) comFC/cflB 416602..417267 (+) 666 WP_023369493.1 ComF family protein Machinery gene
  ID09_RS02100 (ID09_02125) hpf 417344..417886 (+) 543 WP_004194117.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25688.56 Da        Isoelectric Point: 8.5412

>NTDB_id=110838 ID09_RS02095 WP_023369493.1 416602..417267(+) (comFC/cflB) [Streptococcus suis 6407]
MSNCLLCGQAMKNKTRFSDIIFFSKEKSGICEECFSTFEEIAEQHCPHCCKNGESESCKDCQYWQNRGKPVVHTALYQYN
QAMAHYFSRYKFQGDYVLRNIFAKKLRIALSQFPDYTIVPIPISQKRLSERGFNQVEGLLSATNIPYQSLLGKYESQKQS
SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=110838 ID09_RS02095 WP_023369493.1 416602..417267(+) (comFC/cflB) [Streptococcus suis 6407]
ATGTCTAATTGTCTATTGTGCGGTCAAGCTATGAAAAATAAAACAAGATTTTCAGATATCATCTTCTTTAGTAAAGAAAA
ATCGGGCATCTGTGAAGAATGTTTTTCGACTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTGTAAAAATGGAG
AATCGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCGAGGGAAACCCGTTGTCCACACAGCTTTGTACCAATATAAT
CAAGCGATGGCACATTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAATATTTTTGCCAAAAAGCTTAG
AATAGCGTTAAGCCAATTTCCTGACTACACAATTGTTCCCATACCAATTAGTCAAAAACGACTATCAGAACGCGGTTTTA
ATCAAGTGGAAGGACTTTTGAGTGCTACAAATATTCCCTATCAGTCCCTTCTTGGAAAGTATGAAAGCCAAAAACAATCA
TCTAAAAATCGTGCAGAGAGACTAGAAGCAAAACAGATGTTCTATCTATTAGATGAAAAAGAAGTGCCAGAAAAAATATT
ATTATTCGACGATATATATACAACAGGAGCTACAATCCAACTTGCTGTAGAACTTTTCATGAAAATTGGTAGGAAAGAAA
TCAAAACATTTTCACTAACACGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae Rx1

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae D39

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae R6

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae TIGR4

48.624

98.643

0.48
  comFC/cflB Streptococcus mitis NCTC 12261

48.624

98.643

0.48

Multiple sequence alignment