Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACN19N_RS00875 Genome accession   NZ_CP184160
Coordinates   188435..189019 (+) Length   194 a.a.
NCBI ID   WP_005156773.1    Uniprot ID   A0A7Y8Q7D8
Organism   Acinetobacter sp. LF10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 183435..194019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN19N_RS00855 (ACN19N_00855) - 184427..184780 (+) 354 WP_420001803.1 DUF1304 domain-containing protein -
  ACN19N_RS00860 (ACN19N_00860) tenA 184936..185610 (-) 675 WP_269229376.1 thiaminase II -
  ACN19N_RS00865 (ACN19N_00865) - 185785..186867 (+) 1083 WP_269229377.1 DUF475 domain-containing protein -
  ACN19N_RS00870 (ACN19N_00870) - 187019..188383 (+) 1365 WP_034602552.1 MFS transporter -
  ACN19N_RS00875 (ACN19N_00875) ssb 188435..189019 (+) 585 WP_005156773.1 single-stranded DNA-binding protein Machinery gene
  ACN19N_RS00880 (ACN19N_00880) - 189484..190926 (+) 1443 WP_269229378.1 amino acid permease -
  ACN19N_RS00885 (ACN19N_00885) - 190997..192496 (-) 1500 WP_269229379.1 PLP-dependent aminotransferase family protein -
  ACN19N_RS00890 (ACN19N_00890) gabT 192651..193943 (+) 1293 WP_269238679.1 4-aminobutyrate--2-oxoglutarate transaminase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21309.01 Da        Isoelectric Point: 6.4819

>NTDB_id=1107998 ACN19N_RS00875 WP_005156773.1 188435..189019(+) (ssb) [Acinetobacter sp. LF10]
MRGVNKVILVGTLGKDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYSTEIRGDQMQMLDTRQQSEQGGGDFNQPRFNNNNNQGGGYQNTGYNNNQNGYGQGGGFAGGNQG
NYAGSPQAGNGFNTPKSAPQPATAPADLDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=1107998 ACN19N_RS00875 WP_005156773.1 188435..189019(+) (ssb) [Acinetobacter sp. LF10]
ATGCGTGGTGTGAATAAAGTTATTTTAGTAGGTACTTTGGGTAAAGATCCTGAAACAAAAACTTTTCCAAATGGTGGATC
CCTGACTCAATTTTCGATTGCAACAAGTGAGTCTTGGACAGATAAAAATACAGGTGAACGAAAAGAACAAACAGAATGGC
ATCGTATTGTATTACACAACCGTTTAGGTGAAATTGCTCAGCAATATTTGCGTAAAGGCTCAAAGGTGTATATCGAGGGT
TCATTACGTACTCGTCAATGGACAGATCAAAATGGTCAAGAGCGTTACAGTACTGAAATTCGTGGCGATCAAATGCAGAT
GTTAGATACGCGTCAACAAAGTGAACAAGGCGGCGGTGACTTTAATCAACCACGTTTTAATAACAACAATAACCAAGGTG
GTGGTTACCAAAATACGGGTTATAACAACAACCAAAATGGTTATGGTCAGGGTGGTGGTTTTGCTGGCGGTAATCAAGGT
AATTATGCAGGTAGTCCACAAGCAGGTAATGGTTTTAATACACCAAAATCAGCACCTCAGCCTGCGACAGCCCCTGCTGA
TTTAGATGACGATTTACCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y8Q7D8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.246

100

0.526
  ssb Vibrio cholerae strain A1552

45.729

100

0.469
  ssb Neisseria gonorrhoeae MS11

39.062

98.969

0.387
  ssb Neisseria meningitidis MC58

39.062

98.969

0.387

Multiple sequence alignment