Detailed information NTG1107926

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: ACN9LE_RS15490
• Genome accession: NZ_CP184118
• Coordinates: 3197650..3198186 (+)
• Length: 178 a.a.
• NCBI ID: WP_000168305.1
• Uniprot ID: A0A9P2PPK2
• Organism: Escherichia coli strain EC-16-526
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	3190841..3210467	3197650..3198186	within	0

Gene organization within MGE regions

Location: 3190841..3210467

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACN9LE_RS15465 (ACN9LE_15465)	-	3190841..3192661 (-)	1821	WP_000704416.1	ATP-binding protein	-
ACN9LE_RS15470 (ACN9LE_15470)	aphA	3192938..3193651 (+)	714	WP_001226933.1	acid phosphatase AphA	-
ACN9LE_RS15475 (ACN9LE_15475)	yjbQ	3193762..3194178 (+)	417	WP_000270369.1	secondary thiamine-phosphate synthase enzyme YjbQ	-
ACN9LE_RS15480 (ACN9LE_15480)	yjbR	3194182..3194538 (+)	357	WP_000153726.1	MmcQ/YjbR family DNA-binding protein	-
ACN9LE_RS15485 (ACN9LE_15485)	uvrA	3194573..3197395 (-)	2823	WP_000357755.1	excinuclease ABC subunit UvrA	-
ACN9LE_RS15490 (ACN9LE_15490)	ssb	3197650..3198186 (+)	537	WP_000168305.1	single-stranded DNA-binding protein SSB1	Machinery gene
ACN9LE_RS15495 (ACN9LE_15495)	-	3198345..3199592 (+)	1248	WP_000414651.1	tyrosine-type recombinase/integrase	-
ACN9LE_RS15500 (ACN9LE_15500)	-	3199579..3201117 (+)	1539	WP_001333349.1	site-specific integrase	-
ACN9LE_RS15505 (ACN9LE_15505)	-	3201134..3203167 (+)	2034	WP_000807722.1	hypothetical protein	-
ACN9LE_RS15510 (ACN9LE_15510)	-	3203160..3203579 (+)	420	WP_001062122.1	hypothetical protein	-
ACN9LE_RS15515 (ACN9LE_15515)	avs4	3203655..3208418 (+)	4764	WP_000240574.1	AVAST type 4 anti-phage nuclease Avs4	-
ACN9LE_RS15520 (ACN9LE_15520)	-	3208957..3209778 (-)	822	WP_001272932.1	abortive infection system antitoxin AbiGi family protein	-
ACN9LE_RS15525 (ACN9LE_15525)	yjcB	3210186..3210467 (-)	282	WP_001296643.1	YjcB family protein	-

Sequence

Protein

• Length: 178 a.a.
• Molecular weight: 18975.00 Da
• Isoelectric Point: 5.2358

>NTDB_id=1107926 ACN9LE_RS15490 WP_000168305.1 3197650..3198186(+) (ssb) [Escherichia coli strain EC-16-526]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide

• Length: 537 bp

>NTDB_id=1107926 ACN9LE_RS15490 WP_000168305.1 3197650..3198186(+) (ssb) [Escherichia coli strain EC-16-526]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCCACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (6-112)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	74.444	100	0.753
ssb	Glaesserella parasuis strain SC1401	57.923	100	0.596
ssb	Neisseria meningitidis MC58	48.066	100	0.489
ssb	Neisseria gonorrhoeae MS11	48.066	100	0.489