Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACN4ZX_RS10710 Genome accession   NZ_CP183962
Coordinates   2298353..2298901 (-) Length   182 a.a.
NCBI ID   WP_420002703.1    Uniprot ID   -
Organism   Arenibacterium sp. LLYu02     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2293353..2303901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN4ZX_RS10690 (ACN4ZX_10690) - 2293934..2294083 (-) 150 WP_420002699.1 hypothetical protein -
  ACN4ZX_RS10695 (ACN4ZX_10695) - 2294167..2294757 (+) 591 WP_420002700.1 shikimate kinase -
  ACN4ZX_RS10700 (ACN4ZX_10700) aroB 2294757..2295875 (+) 1119 WP_420002701.1 3-dehydroquinate synthase -
  ACN4ZX_RS10705 (ACN4ZX_10705) - 2295952..2298081 (-) 2130 WP_420002702.1 methyl-accepting chemotaxis protein -
  ACN4ZX_RS10710 (ACN4ZX_10710) ssb 2298353..2298901 (-) 549 WP_420002703.1 single-stranded DNA-binding protein Machinery gene
  ACN4ZX_RS10715 (ACN4ZX_10715) - 2299151..2299726 (+) 576 WP_420002704.1 lytic transglycosylase domain-containing protein -
  ACN4ZX_RS10720 (ACN4ZX_10720) - 2299853..2300227 (+) 375 WP_420002705.1 hypothetical protein -
  ACN4ZX_RS10725 (ACN4ZX_10725) - 2300377..2301510 (+) 1134 WP_420002706.1 cytochrome-c peroxidase -
  ACN4ZX_RS10730 (ACN4ZX_10730) - 2301650..2303065 (+) 1416 WP_420002707.1 tetratricopeptide repeat-containing sulfotransferase family protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 18882.50 Da        Isoelectric Point: 4.9929

>NTDB_id=1107374 ACN4ZX_RS10710 WP_420002703.1 2298353..2298901(-) (ssb) [Arenibacterium sp. LLYu02]
MAGSLNKVMLIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNTGERRERTEWHTVAIFSEGLVRVCEQYLRKGSKVYI
EGQLQTRKWQDQSGQDRYSTEIVLQGLGGTLTMLDGRGEGGGGGGGYGGGQGGGGYGGGQDDGGYGGGYGGGNQGGGYGG
GNQGGGFGGGASQNIDDDEIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=1107374 ACN4ZX_RS10710 WP_420002703.1 2298353..2298901(-) (ssb) [Arenibacterium sp. LLYu02]
ATGGCCGGATCCCTGAACAAAGTAATGCTCATCGGCAACCTTGGCCGCGACCCGGAAGTCCGCAGCTTCCAGAACGGCGG
CAAAGTCTGCAACCTGCGCATTGCGACCTCGGAAACCTGGAAAGACCGCAACACCGGCGAGCGCCGCGAGCGCACCGAAT
GGCACACGGTCGCCATCTTCAGCGAGGGCCTGGTGCGGGTCTGCGAGCAATATCTGCGCAAAGGCTCCAAGGTCTATATC
GAAGGCCAGCTGCAAACGCGCAAATGGCAGGATCAAAGCGGTCAGGATCGCTACTCCACCGAGATCGTCCTGCAGGGCCT
CGGCGGCACGCTGACCATGCTCGACGGTCGCGGTGAAGGCGGCGGCGGTGGTGGCGGCTACGGTGGCGGCCAAGGTGGCG
GTGGCTACGGCGGCGGTCAGGATGACGGTGGCTACGGTGGCGGCTATGGCGGCGGCAATCAGGGCGGCGGCTACGGCGGC
GGCAACCAAGGCGGCGGCTTTGGCGGCGGGGCTTCCCAAAACATCGACGACGACGAAATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.619

100

0.495
  ssb Vibrio cholerae strain A1552

50

97.802

0.489
  ssb Neisseria gonorrhoeae MS11

41.111

98.901

0.407
  ssb Neisseria meningitidis MC58

41.111

98.901

0.407

Multiple sequence alignment