Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   ACN9KP_RS17000 Genome accession   NZ_CP183947
Coordinates   3443929..3445092 (-) Length   387 a.a.
NCBI ID   WP_003151385.1    Uniprot ID   -
Organism   Bacillus velezensis strain Ya-1 isolate Tropical rainforest soil     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3438929..3450092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN9KP_RS16970 (ACN9KP_16970) - 3439194..3439613 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  ACN9KP_RS16975 (ACN9KP_16975) comFC 3439687..3440376 (-) 690 WP_198317760.1 phosphoribosyltransferase family protein Machinery gene
  ACN9KP_RS16980 (ACN9KP_16980) - 3440382..3440666 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  ACN9KP_RS16985 (ACN9KP_16985) comFA 3440724..3442109 (-) 1386 WP_095318332.1 DEAD/DEAH box helicase Machinery gene
  ACN9KP_RS16990 (ACN9KP_16990) - 3442217..3443065 (-) 849 WP_003151387.1 DegV family protein -
  ACN9KP_RS16995 (ACN9KP_16995) degU 3443163..3443852 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACN9KP_RS17000 (ACN9KP_17000) degS 3443929..3445092 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  ACN9KP_RS17005 (ACN9KP_17005) - 3445315..3445962 (+) 648 WP_003151384.1 YigZ family protein -
  ACN9KP_RS17010 (ACN9KP_17010) - 3445967..3447181 (+) 1215 WP_057080262.1 LCP family protein -
  ACN9KP_RS17015 (ACN9KP_17015) - 3447271..3448347 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  ACN9KP_RS17020 (ACN9KP_17020) tuaH 3448480..3449676 (-) 1197 WP_283002447.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 45014.82 Da        Isoelectric Point: 7.1378

>NTDB_id=1107342 ACN9KP_RS17000 WP_003151385.1 3443929..3445092(-) (degS) [Bacillus velezensis strain Ya-1 isolate Tropical rainforest soil]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENKRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=1107342 ACN9KP_RS17000 WP_003151385.1 3443929..3445092(-) (degS) [Bacillus velezensis strain Ya-1 isolate Tropical rainforest soil]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTTGAAGAACTCAAACAGATCAAACAGCAGG
TGTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTGAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAGCAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGCTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAGATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTTCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGACGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGTATCGGAGACACGGAGAACAAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAACATTCAGAATCAGAGGAAATAACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTTATCATTAAGGACAACGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTTGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

95.325

99.483

0.948

Multiple sequence alignment