Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACN9KP_RS16985 Genome accession   NZ_CP183947
Coordinates   3440724..3442109 (-) Length   461 a.a.
NCBI ID   WP_095318332.1    Uniprot ID   -
Organism   Bacillus velezensis strain Ya-1 isolate Tropical rainforest soil     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3435724..3447109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN9KP_RS16950 (ACN9KP_16950) flgL 3435899..3436816 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  ACN9KP_RS16955 (ACN9KP_16955) flgK 3436828..3438345 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  ACN9KP_RS16960 (ACN9KP_16960) - 3438361..3438843 (-) 483 WP_003151394.1 flagellar protein FlgN -
  ACN9KP_RS16965 (ACN9KP_16965) flgM 3438858..3439124 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACN9KP_RS16970 (ACN9KP_16970) - 3439194..3439613 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  ACN9KP_RS16975 (ACN9KP_16975) comFC 3439687..3440376 (-) 690 WP_198317760.1 phosphoribosyltransferase family protein Machinery gene
  ACN9KP_RS16980 (ACN9KP_16980) - 3440382..3440666 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  ACN9KP_RS16985 (ACN9KP_16985) comFA 3440724..3442109 (-) 1386 WP_095318332.1 DEAD/DEAH box helicase Machinery gene
  ACN9KP_RS16990 (ACN9KP_16990) - 3442217..3443065 (-) 849 WP_003151387.1 DegV family protein -
  ACN9KP_RS16995 (ACN9KP_16995) degU 3443163..3443852 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACN9KP_RS17000 (ACN9KP_17000) degS 3443929..3445092 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  ACN9KP_RS17005 (ACN9KP_17005) - 3445315..3445962 (+) 648 WP_003151384.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52472.88 Da        Isoelectric Point: 10.1928

>NTDB_id=1107340 ACN9KP_RS16985 WP_095318332.1 3440724..3442109(-) (comFA) [Bacillus velezensis strain Ya-1 isolate Tropical rainforest soil]
MAEGASEFSEVRDFFYGRHLLRSEIPFSDHRIKRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAPENSWGPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNQGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALIYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVLFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=1107340 ACN9KP_RS16985 WP_095318332.1 3440724..3442109(-) (comFA) [Bacillus velezensis strain Ya-1 isolate Tropical rainforest soil]
ATGGCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATCGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAGAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
CTGGGGGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCAAGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTATTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAATGCTGAAGCAGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTGCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGATTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.826

99.783

0.627

Multiple sequence alignment