Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ACN9KP_RS16995 Genome accession   NZ_CP183947
Coordinates   3443163..3443852 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain Ya-1 isolate Tropical rainforest soil     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3438163..3448852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN9KP_RS16960 (ACN9KP_16960) - 3438361..3438843 (-) 483 WP_003151394.1 flagellar protein FlgN -
  ACN9KP_RS16965 (ACN9KP_16965) flgM 3438858..3439124 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACN9KP_RS16970 (ACN9KP_16970) - 3439194..3439613 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  ACN9KP_RS16975 (ACN9KP_16975) comFC 3439687..3440376 (-) 690 WP_198317760.1 phosphoribosyltransferase family protein Machinery gene
  ACN9KP_RS16980 (ACN9KP_16980) - 3440382..3440666 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  ACN9KP_RS16985 (ACN9KP_16985) comFA 3440724..3442109 (-) 1386 WP_095318332.1 DEAD/DEAH box helicase Machinery gene
  ACN9KP_RS16990 (ACN9KP_16990) - 3442217..3443065 (-) 849 WP_003151387.1 DegV family protein -
  ACN9KP_RS16995 (ACN9KP_16995) degU 3443163..3443852 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACN9KP_RS17000 (ACN9KP_17000) degS 3443929..3445092 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  ACN9KP_RS17005 (ACN9KP_17005) - 3445315..3445962 (+) 648 WP_003151384.1 YigZ family protein -
  ACN9KP_RS17010 (ACN9KP_17010) - 3445967..3447181 (+) 1215 WP_057080262.1 LCP family protein -
  ACN9KP_RS17015 (ACN9KP_17015) - 3447271..3448347 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1107341 ACN9KP_RS16995 WP_003219701.1 3443163..3443852(-) (degU) [Bacillus velezensis strain Ya-1 isolate Tropical rainforest soil]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1107341 ACN9KP_RS16995 WP_003219701.1 3443163..3443852(-) (degU) [Bacillus velezensis strain Ya-1 isolate Tropical rainforest soil]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment