Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ACM5XX_RS12135 Genome accession   NZ_CP183946
Coordinates   2488862..2489197 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain HKSSLJEBR3     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2483862..2494197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM5XX_RS12115 (ACM5XX_12115) gcvT 2484473..2485573 (-) 1101 WP_014305405.1 glycine cleavage system aminomethyltransferase GcvT -
  ACM5XX_RS12120 (ACM5XX_12120) - 2485996..2487666 (+) 1671 WP_003153107.1 DEAD/DEAH box helicase -
  ACM5XX_RS12125 (ACM5XX_12125) - 2487684..2488478 (+) 795 WP_014305407.1 YqhG family protein -
  ACM5XX_RS12130 (ACM5XX_12130) sinI 2488655..2488828 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  ACM5XX_RS12135 (ACM5XX_12135) sinR 2488862..2489197 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  ACM5XX_RS12140 (ACM5XX_12140) tasA 2489245..2490030 (-) 786 WP_003153102.1 biofilm matrix protein TasA -
  ACM5XX_RS12145 (ACM5XX_12145) sipW 2490094..2490678 (-) 585 WP_014305408.1 signal peptidase I SipW -
  ACM5XX_RS12150 (ACM5XX_12150) tapA 2490650..2491321 (-) 672 WP_014305409.1 amyloid fiber anchoring/assembly protein TapA -
  ACM5XX_RS12155 (ACM5XX_12155) - 2491580..2491909 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  ACM5XX_RS12160 (ACM5XX_12160) - 2491949..2492128 (-) 180 WP_003153093.1 YqzE family protein -
  ACM5XX_RS12165 (ACM5XX_12165) comGG 2492185..2492562 (-) 378 WP_014305410.1 competence type IV pilus minor pilin ComGG Machinery gene
  ACM5XX_RS12170 (ACM5XX_12170) comGF 2492563..2493063 (-) 501 WP_014305411.1 competence type IV pilus minor pilin ComGF -
  ACM5XX_RS12175 (ACM5XX_12175) comGE 2492972..2493286 (-) 315 WP_041481885.1 competence type IV pilus minor pilin ComGE Machinery gene
  ACM5XX_RS12180 (ACM5XX_12180) comGD 2493270..2493707 (-) 438 WP_014305413.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACM5XX_RS12185 (ACM5XX_12185) comGC 2493697..2494005 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1107241 ACM5XX_RS12135 WP_003153104.1 2488862..2489197(+) (sinR) [Bacillus velezensis strain HKSSLJEBR3]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1107241 ACM5XX_RS12135 WP_003153104.1 2488862..2489197(+) (sinR) [Bacillus velezensis strain HKSSLJEBR3]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment