Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACN9JG_RS02105 Genome accession   NZ_CP183925
Coordinates   415011..415499 (-) Length   162 a.a.
NCBI ID   WP_101340629.1    Uniprot ID   A0A2T5KF76
Organism   Cereibacter azotoformans strain YS02     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 410011..420499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN9JG_RS02060 (ACN9JG_02060) nusB 410360..410833 (+) 474 WP_011907481.1 transcription antitermination factor NusB -
  ACN9JG_RS02065 (ACN9JG_02065) - 411078..411398 (+) 321 WP_011907482.1 hypothetical protein -
  ACN9JG_RS02070 (ACN9JG_02070) - 411600..412472 (+) 873 WP_101339765.1 DUF481 domain-containing protein -
  ACN9JG_RS02075 (ACN9JG_02075) - 412842..413309 (+) 468 WP_044247750.1 MmcB family DNA repair protein -
  ACN9JG_RS02080 (ACN9JG_02080) - 413310..413531 (-) 222 WP_011907485.1 DUF6324 family protein -
  ACN9JG_RS02085 (ACN9JG_02085) - 413644..414129 (+) 486 WP_011907486.1 GNAT family N-acetyltransferase -
  ACN9JG_RS02095 (ACN9JG_02095) - 414549..414747 (-) 199 Protein_414 transposase -
  ACN9JG_RS02100 (ACN9JG_02100) - 414752..414884 (+) 133 Protein_415 IS5/IS1182 family transposase -
  ACN9JG_RS02105 (ACN9JG_02105) ssb 415011..415499 (-) 489 WP_101340629.1 single-stranded DNA-binding protein Machinery gene
  ACN9JG_RS02110 (ACN9JG_02110) - 415716..416330 (+) 615 WP_108220141.1 lytic transglycosylase domain-containing protein -
  ACN9JG_RS02115 (ACN9JG_02115) serS 416387..417679 (-) 1293 WP_420023404.1 serine--tRNA ligase -
  ACN9JG_RS02120 (ACN9JG_02120) - 417767..418339 (-) 573 WP_420023405.1 superoxide dismutase family protein -
  ACN9JG_RS02125 (ACN9JG_02125) yajC 418587..418916 (+) 330 WP_011907512.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17863.54 Da        Isoelectric Point: 5.9821

>NTDB_id=1107188 ACN9JG_RS02105 WP_101340629.1 415011..415499(-) (ssb) [Cereibacter azotoformans strain YS02]
MAGSVNKVIIIGNLGRDPEVRSFQNGGKVVNLRIATSEQWRDRASGERKERTEWHSVAIFDENLARVAEQYLRKGSTVYI
EGQLETRKWQDQSGQDRYTTEVVLRPFRSALTMLGGRGDSAGSSGGYEDRGGSESYDNFGGSRGNAPSGGGRRSDLDDEI
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=1107188 ACN9JG_RS02105 WP_101340629.1 415011..415499(-) (ssb) [Cereibacter azotoformans strain YS02]
ATGGCGGGCTCGGTCAACAAGGTCATCATCATCGGCAATCTCGGCCGCGATCCCGAGGTTCGGAGCTTTCAGAACGGCGG
GAAGGTCGTGAACCTGCGCATCGCCACATCCGAGCAGTGGCGCGACCGCGCCTCGGGCGAGCGGAAGGAGCGGACCGAGT
GGCATTCGGTTGCGATCTTCGACGAGAACCTCGCCCGGGTGGCCGAGCAATATCTGCGCAAGGGCTCGACGGTCTATATC
GAGGGCCAGCTCGAGACGCGGAAGTGGCAGGACCAGTCGGGCCAGGACCGCTACACGACCGAGGTCGTGCTGCGCCCGTT
CCGCAGCGCCCTGACGATGCTCGGAGGCCGCGGAGACAGCGCGGGCTCCAGCGGCGGCTACGAAGACCGCGGCGGCTCGG
AAAGCTACGACAACTTCGGAGGCTCCCGCGGCAACGCCCCCTCGGGTGGCGGTCGGCGGAGCGATCTGGATGACGAGATC
CCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T5KF76

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.237

100

0.531
  ssb Vibrio cholerae strain A1552

49.711

100

0.531
  ssb Neisseria gonorrhoeae MS11

41.899

100

0.463
  ssb Neisseria meningitidis MC58

40.223

100

0.444

Multiple sequence alignment