Detailed information NTG1107181

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: ACLKMZ_RS14750
• Genome accession: NZ_CP183909
• Coordinates: 3028901..3029506 (-)
• Length: 201 a.a.
• NCBI ID: WP_411691873.1
• Uniprot ID: -
• Organism: Acinetobacter gandensis strain M1_NDM_tet(X3)
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	3026594..3040975	3028901..3029506	within	0

Gene organization within MGE regions

Location: 3026594..3040975

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLKMZ_RS14735	-	3026594..3027598 (-)	1005	WP_411691565.1	T6SS immunity protein Tli4 family protein	-
ACLKMZ_RS14740	-	3027811..3028206 (+)	396	WP_419879891.1	transposase family protein	-
ACLKMZ_RS14745	-	3028154..3028624 (+)	471	WP_411691954.1	transposase family protein	-
ACLKMZ_RS14750	ssb	3028901..3029506 (-)	606	WP_411691873.1	single-stranded DNA-binding protein	Machinery gene
ACLKMZ_RS14755	-	3029558..3030922 (-)	1365	WP_411691872.1	MFS transporter	-
ACLKMZ_RS14760	-	3031080..3032168 (-)	1089	WP_067761532.1	DUF475 domain-containing protein	-
ACLKMZ_RS14765	tenA	3032377..3033039 (+)	663	WP_180058352.1	thiaminase II	-
ACLKMZ_RS14770	-	3033114..3033836 (-)	723	WP_180058353.1	hypothetical protein	-
ACLKMZ_RS14775	-	3034003..3034344 (-)	342	WP_067761538.1	GlpM family protein	-
ACLKMZ_RS14780	-	3034480..3034848 (-)	369	WP_180079512.1	hypothetical protein	-
ACLKMZ_RS14785	uvrA	3035030..3037861 (+)	2832	WP_411691871.1	excinuclease ABC subunit UvrA	-
ACLKMZ_RS14790	tnpC	3038060..3039685 (-)	1626	WP_086378841.1	IS66 family transposase	-
ACLKMZ_RS14795	tnpB	3039760..3040095 (-)	336	WP_171291265.1	IS66 family insertion sequence element accessory protein TnpB	-
ACLKMZ_RS14800	tnpA	3040092..3040475 (-)	384	WP_086378843.1	IS66-like element accessory protein TnpA	-
ACLKMZ_RS14805	-	3040541..3040975 (+)	435	WP_411691490.1	hypothetical protein	-

Sequence

Protein

• Length: 201 a.a.
• Molecular weight: 22050.73 Da
• Isoelectric Point: 6.4829

>NTDB_id=1107181 ACLKMZ_RS14750 WP_411691873.1 3028901..3029506(-) (ssb) [Acinetobacter gandensis strain M1_NDM_tet(X3)]
MRGVNKVILVGTLGKDPETKTFANGGSLTQFSIATSDSWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDNNRQQGEQGQGGEFNQPRFNNQQGGNNQGGYNNNQSGGYGNQGGNNQGGYG
NNQPAQGNSYGNNNPGGFAPKQQPAPTPAPAAADLDDDLPF

Nucleotide

• Length: 606 bp

>NTDB_id=1107181 ACLKMZ_RS14750 WP_411691873.1 3028901..3029506(-) (ssb) [Acinetobacter gandensis strain M1_NDM_tet(X3)]
ATGCGTGGTGTAAATAAAGTCATTTTAGTCGGTACTTTGGGTAAAGACCCAGAAACTAAAACTTTTGCAAATGGTGGTTC
ATTAACCCAATTTTCAATCGCGACAAGTGATTCGTGGACTGATAAAAATACGGGTGAGCGTAAAGAGCAAACTGAATGGC
ACCGTATTGTGTTGCATAACCGTTTAGGTGAAATTGCTCAGCAATATTTGCGTAAAGGTTCTAAAGTTTATATTGAAGGT
TCATTACGTACACGCCAATGGACTGATCAAAATGGTCAAGAGCGTTATACCACTGAAATTCGTGGTGAACAGATGCAAAT
GTTGGATAACAACCGTCAACAAGGCGAGCAAGGTCAAGGCGGTGAGTTTAACCAACCACGTTTTAACAACCAACAAGGTG
GCAATAACCAAGGCGGTTATAACAATAACCAGTCTGGCGGTTACGGCAATCAGGGCGGTAATAATCAAGGTGGTTATGGC
AATAATCAACCAGCTCAAGGCAATAGTTATGGCAACAACAACCCAGGTGGTTTTGCGCCGAAACAACAGCCTGCGCCGAC
ACCAGCACCTGCTGCTGCAGATTTAGATGATGACTTACCGTTTTGA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (4-108)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Glaesserella parasuis strain SC1401	49.751	100	0.498
ssb	Vibrio cholerae strain A1552	43.415	100	0.443
ssb	Neisseria gonorrhoeae MS11	37.561	100	0.383
ssb	Neisseria meningitidis MC58	37.5	99.502	0.373