Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACLKM0_RS00830 Genome accession   NZ_CP183907
Coordinates   182083..182649 (+) Length   188 a.a.
NCBI ID   WP_005180729.1    Uniprot ID   -
Organism   Acinetobacter indicus strain M3_NDM     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 177083..187649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM0_RS00815 tenA 178489..179166 (-) 678 WP_075167304.1 thiaminase II -
  ACLKM0_RS00820 - 179432..180514 (+) 1083 WP_005180731.1 DUF475 domain-containing protein -
  ACLKM0_RS00825 - 180667..182031 (+) 1365 WP_411688591.1 MFS transporter -
  ACLKM0_RS00830 ssb 182083..182649 (+) 567 WP_005180729.1 single-stranded DNA-binding protein Machinery gene
  ACLKM0_RS00835 ahpC 182892..183455 (+) 564 WP_005180661.1 alkyl hydroperoxide reductase subunit C -
  ACLKM0_RS00840 - 183656..184531 (+) 876 WP_411688593.1 pirin family protein -
  ACLKM0_RS00845 - 184965..186263 (+) 1299 WP_034598019.1 FAD-dependent oxidoreductase -
  ACLKM0_RS00850 - 186267..187091 (+) 825 WP_075167307.1 SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20640.39 Da        Isoelectric Point: 6.4819

>NTDB_id=1107108 ACLKM0_RS00830 WP_005180729.1 182083..182649(+) (ssb) [Acinetobacter indicus strain M3_NDM]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDAWTDKTTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSGRQQGEQGDNGFSQPRFNNNQGGGYSNNNQGGYAPQAQGGFNNNNAGGGY
GNQGGYQQPKPAPAATPAPADLDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=1107108 ACLKM0_RS00830 WP_005180729.1 182083..182649(+) (ssb) [Acinetobacter indicus strain M3_NDM]
ATGCGTGGTGTAAATAAGGTCATTTTAGTTGGTACTTTAGGTCGAGATCCAGAAACAAAAACTTTCCCGAATGGTGGCTC
GCTTACGCAATTTTCTATTGCCACCAGTGATGCGTGGACCGATAAAACCACCGGTGAGCGTAAAGAGCAAACCGAATGGC
ACCGTATTGTGCTGCATAACCGTTTAGGTGAAATCGCGCAGCAATACTTACGCAAAGGTTCAAAAGTCTATATTGAAGGT
TCATTGCGTACCCGTCAGTGGACCGATCAGAATGGTCAGGAACGCTACACCACAGAAATTCGTGGCGAGCAAATGCAGAT
GCTGGACTCTGGTCGTCAGCAAGGTGAGCAGGGCGATAATGGTTTTAGCCAGCCACGTTTTAACAATAACCAGGGCGGTG
GTTATAGCAATAACAACCAGGGTGGCTATGCGCCGCAAGCTCAAGGTGGTTTTAACAACAATAATGCCGGTGGTGGCTAT
GGCAACCAGGGCGGTTATCAGCAACCGAAACCAGCTCCTGCTGCAACGCCTGCACCTGCAGATTTGGATGATGACTTACC
GTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.546

100

0.532
  ssb Vibrio cholerae strain A1552

43.939

100

0.463
  ssb Neisseria meningitidis MC58

38.421

100

0.388
  ssb Neisseria gonorrhoeae MS11

38.421

100

0.388

Multiple sequence alignment