Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACLKM1_RS00765 Genome accession   NZ_CP183903
Coordinates   172903..173493 (+) Length   196 a.a.
NCBI ID   WP_005095120.1    Uniprot ID   -
Organism   Acinetobacter pseudolwoffii strain M5_NDM     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 167903..178493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM1_RS00745 - 168535..168903 (-) 369 WP_005095110.1 hypothetical protein -
  ACLKM1_RS00750 tenA 169342..170013 (-) 672 WP_100356962.1 thiaminase II -
  ACLKM1_RS00755 - 170235..171323 (+) 1089 WP_005173187.1 DUF475 domain-containing protein -
  ACLKM1_RS00760 - 171487..172851 (+) 1365 WP_034608840.1 MFS transporter -
  ACLKM1_RS00765 ssb 172903..173493 (+) 591 WP_005095120.1 single-stranded DNA-binding protein Machinery gene
  ACLKM1_RS00770 ahpC 173823..174386 (+) 564 WP_005095146.1 alkyl hydroperoxide reductase subunit C -
  ACLKM1_RS00775 - 174468..175391 (-) 924 WP_005095147.1 LysR substrate-binding domain-containing protein -
  ACLKM1_RS00780 ycaC 175535..176161 (-) 627 WP_005095149.1 isochorismate family cysteine hydrolase YcaC -
  ACLKM1_RS00785 - 176470..177348 (+) 879 WP_005095152.1 pirin family protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21392.05 Da        Isoelectric Point: 6.4810

>NTDB_id=1107071 ACLKM1_RS00765 WP_005095120.1 172903..173493(+) (ssb) [Acinetobacter pseudolwoffii strain M5_NDM]
MRGVNKVILVGTLGKDPETKTFANGGSLTQFSIATSDSWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDSNRSQGEQGDNSFNQPRFNNNNQASNNQSGGYGNNPQSGYGSAPQQGGFNN
NQGGGYGNNNPSGFAPKSAPAPTAAPAADLDDDLPF

Nucleotide


Download         Length: 591 bp        

>NTDB_id=1107071 ACLKM1_RS00765 WP_005095120.1 172903..173493(+) (ssb) [Acinetobacter pseudolwoffii strain M5_NDM]
ATGCGTGGTGTAAATAAAGTCATTTTAGTGGGTACTTTGGGTAAAGATCCGGAAACCAAAACTTTTGCAAATGGTGGTTC
TCTCACTCAATTTTCGATTGCTACCAGCGATTCGTGGACAGATAAAAGTACCGGTGAACGTAAAGAACAAACGGAATGGC
ACCGTATCGTGTTGCATAACCGTTTAGGCGAAATTGCGCAGCAATACCTGCGTAAAGGTTCTAAAGTATATATTGAAGGT
TCATTACGTACCCGTCAGTGGACTGATCAAAATGGTCAGGAGCGCTATACAACGGAAATCCGTGGTGATCAAATGCAGAT
GCTGGACTCGAATCGTTCACAAGGCGAGCAGGGCGACAACAGTTTTAACCAGCCACGTTTTAATAACAATAATCAGGCGA
GTAACAACCAAAGTGGCGGTTATGGCAATAATCCGCAGTCGGGTTATGGTTCAGCGCCGCAGCAAGGCGGTTTCAACAAC
AATCAGGGTGGCGGTTATGGCAACAATAACCCGAGTGGTTTTGCACCGAAATCTGCACCTGCACCAACAGCAGCGCCTGC
AGCTGATTTAGATGATGATCTTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.792

100

0.515
  ssb Vibrio cholerae strain A1552

41.5

100

0.423
  ssb Neisseria meningitidis MC58

38.342

98.469

0.378
  ssb Neisseria gonorrhoeae MS11

38.342

98.469

0.378

Multiple sequence alignment