Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   ACLKM2_RS12495 Genome accession   NZ_CP183899
Coordinates   2630423..2631562 (+) Length   379 a.a.
NCBI ID   WP_100329712.1    Uniprot ID   -
Organism   Acinetobacter pseudolwoffii strain M8_NDM_tet(X3)     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 2625423..2636562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM2_RS12475 - 2625860..2627947 (-) 2088 WP_411686551.1 TonB-dependent copper receptor -
  ACLKM2_RS12480 - 2628020..2628433 (-) 414 WP_005173863.1 DUF2946 family protein -
  ACLKM2_RS12485 def 2628526..2629056 (-) 531 WP_005173860.1 peptide deformylase -
  ACLKM2_RS12490 tsaP 2629176..2630330 (+) 1155 WP_411686550.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ACLKM2_RS12495 dprA 2630423..2631562 (+) 1140 WP_100329712.1 DNA-processing protein DprA Machinery gene
  ACLKM2_RS12500 - 2631604..2632173 (+) 570 WP_411686549.1 L-threonylcarbamoyladenylate synthase -
  ACLKM2_RS12505 - 2632614..2633510 (-) 897 WP_180000270.1 DMT family transporter -
  ACLKM2_RS12510 - 2633702..2634247 (+) 546 WP_100358032.1 glutathione peroxidase -
  ACLKM2_RS12515 - 2634776..2635378 (+) 603 WP_005173841.1 hypothetical protein -
  ACLKM2_RS12520 - 2635508..2636511 (+) 1004 Protein_2399 pirin family protein -

Sequence


Protein


Download         Length: 379 a.a.        Molecular weight: 43039.69 Da        Isoelectric Point: 7.0147

>NTDB_id=1107069 ACLKM2_RS12495 WP_100329712.1 2630423..2631562(+) (dprA) [Acinetobacter pseudolwoffii strain M8_NDM_tet(X3)]
MLNRLSTSQINAITLWYLVQHSLTSFYKISRHYADLADAVHCSQIETWQKLGLHKNHIQRLKDFQSSESQTHFQHSLEQI
QLHSDFVLLHTDAEYPQQLSHYEHKPPILFGQGHADQLLQPQIAIVGSRKPSPHGQQVAYDFAFYLSEQGFYINSGLAQG
IDEAAHRAALQHRRTIAVMGTGIEQTYPAVHQALRQQMINHGGTVITEFLPFTPPLQQHFPRRNRIVSGLSLGVIVAEAA
LKSGSLLTAQWAAEQGKNIFAIPGHIYSEHHQGCHQLIREGAILIDHPQQVIEDLALATQWQANANHFKKDTYPEQERTI
PPHLIHLYNQLDWVGQSLDQLSFHLQQEVSSLTSQLMELELLGLSTQQAGMYQRCRPLK

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=1107069 ACLKM2_RS12495 WP_100329712.1 2630423..2631562(+) (dprA) [Acinetobacter pseudolwoffii strain M8_NDM_tet(X3)]
ATGTTGAACAGATTGTCGACATCACAAATCAATGCCATCACGCTGTGGTATTTGGTGCAACATTCCCTCACCAGCTTTTA
TAAAATCAGTCGGCATTATGCAGATCTTGCGGATGCAGTCCATTGTTCTCAAATCGAGACCTGGCAAAAGCTCGGCCTTC
ATAAAAATCATATTCAACGCCTGAAAGACTTTCAAAGCAGCGAATCTCAAACCCATTTTCAGCACAGTCTAGAACAGATT
CAGTTGCACAGTGATTTTGTGCTTTTGCATACAGATGCTGAATATCCACAACAACTGAGTCATTATGAGCATAAGCCGCC
AATTCTGTTCGGGCAGGGACATGCAGATCAGTTACTCCAGCCACAAATTGCAATTGTTGGCAGTCGCAAGCCAAGTCCGC
ACGGACAGCAAGTCGCCTATGACTTTGCCTTTTATCTGAGTGAGCAAGGTTTTTATATTAATAGTGGCTTGGCACAAGGG
ATTGATGAAGCAGCACATCGGGCTGCGCTACAACATCGACGAACGATTGCAGTGATGGGTACAGGGATCGAACAGACCTA
TCCTGCTGTACATCAAGCACTACGTCAGCAAATGATTAACCACGGTGGTACAGTTATTACTGAGTTTTTACCTTTTACCC
CACCCTTGCAGCAGCATTTTCCACGGCGCAACCGAATTGTCAGCGGCTTAAGTCTTGGGGTGATTGTGGCAGAAGCCGCG
TTAAAAAGTGGTTCATTGCTTACGGCACAATGGGCAGCGGAACAAGGCAAGAACATATTTGCAATTCCGGGGCATATTTA
CAGTGAACATCATCAAGGTTGTCATCAACTGATTCGTGAAGGTGCAATTTTAATTGACCATCCACAGCAAGTGATTGAGG
ATTTAGCCCTAGCAACACAGTGGCAAGCGAATGCAAATCACTTCAAAAAAGATACTTATCCTGAGCAAGAGCGCACTATC
CCGCCCCATTTAATTCATCTTTATAATCAACTCGATTGGGTCGGACAGAGTCTGGATCAGCTCAGTTTTCATTTACAACA
GGAAGTATCTTCCTTGACCAGTCAATTGATGGAACTTGAGCTGCTCGGCTTGAGTACTCAACAAGCGGGCATGTATCAGC
GTTGTCGTCCACTGAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

61.17

99.208

0.607

  dprA Acinetobacter baumannii D1279779

60.372

99.208

0.599

  dprA Acinetobacter baylyi ADP1

56.842

100

0.57


Multiple sequence alignment