Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   ACLKM2_RS12490 Genome accession   NZ_CP183899
Coordinates   2629176..2630330 (+) Length   384 a.a.
NCBI ID   WP_411686550.1    Uniprot ID   -
Organism   Acinetobacter pseudolwoffii strain M8_NDM_tet(X3)     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2624176..2635330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM2_RS12475 - 2625860..2627947 (-) 2088 WP_411686551.1 TonB-dependent copper receptor -
  ACLKM2_RS12480 - 2628020..2628433 (-) 414 WP_005173863.1 DUF2946 family protein -
  ACLKM2_RS12485 def 2628526..2629056 (-) 531 WP_005173860.1 peptide deformylase -
  ACLKM2_RS12490 tsaP 2629176..2630330 (+) 1155 WP_411686550.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ACLKM2_RS12495 dprA 2630423..2631562 (+) 1140 WP_100329712.1 DNA-processing protein DprA Machinery gene
  ACLKM2_RS12500 - 2631604..2632173 (+) 570 WP_411686549.1 L-threonylcarbamoyladenylate synthase -
  ACLKM2_RS12505 - 2632614..2633510 (-) 897 WP_180000270.1 DMT family transporter -
  ACLKM2_RS12510 - 2633702..2634247 (+) 546 WP_100358032.1 glutathione peroxidase -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42125.43 Da        Isoelectric Point: 9.0682

>NTDB_id=1107068 ACLKM2_RS12490 WP_411686550.1 2629176..2630330(+) (tsaP) [Acinetobacter pseudolwoffii strain M8_NDM_tet(X3)]
MKKVLKGMPFFSALGFKNQMLALAVCVGVGMGTIHSAEAAPARNVNPPALKANAPNVYVVKKGDTLWDISKRFLKNPVRW
PEIWASNKHVKNPHWIFPGDRLLMCDYQGRPIIGKDEGDGCDGIISRYLGSTSLQPQIRVESLNNTIPVIPLEHIKQWLE
RYTLMAPDSVQGTPYILGTADQRVLAGKGQKVYVRGNGLVVGQRYAVYREAEPYVFTDANGKKYTAALELQQVASGIAVR
SEGEVTTLELTDSYNAEVRRGDRVLAEYDPMLPTLFYPTNAESIVPGGQIVRVLGSIGTAARHSVVTLDRGTAHGVQTGH
VFSVNQKGEVVTDPKTKERVQLPGERIGQVMVFKAFDQLSYAYVLDSELPIKVGAGIQPPLLED

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=1107068 ACLKM2_RS12490 WP_411686550.1 2629176..2630330(+) (tsaP) [Acinetobacter pseudolwoffii strain M8_NDM_tet(X3)]
ATGAAAAAGGTTTTGAAGGGCATGCCATTTTTTAGTGCCTTGGGGTTTAAAAATCAGATGCTGGCACTCGCCGTTTGTGT
CGGTGTCGGTATGGGGACTATTCATTCTGCCGAGGCCGCACCTGCACGTAATGTCAATCCGCCGGCATTAAAAGCCAATG
CACCCAATGTTTATGTGGTCAAAAAAGGCGATACTCTCTGGGACATCTCAAAACGCTTTTTGAAAAACCCGGTGCGTTGG
CCTGAAATCTGGGCCAGCAACAAGCATGTGAAAAATCCACATTGGATTTTCCCGGGCGATCGCCTGTTGATGTGTGATTA
CCAGGGCCGTCCGATTATTGGCAAAGATGAAGGTGATGGTTGTGACGGTATTATCAGCCGCTATCTGGGCAGCACCTCTC
TGCAACCTCAGATTCGGGTTGAATCTTTAAACAATACCATTCCAGTGATTCCACTAGAACATATCAAACAGTGGCTAGAG
CGCTATACCCTGATGGCGCCTGATTCAGTTCAAGGCACCCCATACATTCTTGGAACTGCAGATCAGCGCGTACTGGCGGG
CAAAGGCCAGAAAGTCTATGTACGTGGTAACGGTCTGGTCGTTGGTCAACGCTATGCCGTTTATCGTGAAGCTGAGCCTT
ATGTATTTACCGATGCCAATGGCAAGAAATATACTGCTGCACTCGAGCTGCAACAGGTGGCATCTGGTATTGCGGTACGT
AGTGAAGGTGAGGTAACCACACTGGAGCTGACTGACAGTTATAACGCGGAGGTGCGTCGCGGTGACCGCGTACTCGCTGA
ATACGACCCGATGTTACCGACGCTGTTCTACCCAACCAATGCAGAAAGTATTGTGCCTGGTGGTCAGATTGTGCGTGTAT
TGGGGTCGATTGGTACTGCAGCACGTCATAGTGTCGTCACCCTTGACCGTGGTACGGCACATGGCGTTCAGACAGGTCAT
GTCTTTAGCGTAAACCAGAAAGGTGAAGTGGTGACTGATCCGAAGACTAAAGAACGGGTGCAATTGCCAGGTGAGCGTAT
TGGTCAGGTCATGGTCTTTAAAGCCTTCGATCAATTGAGCTATGCCTATGTGCTGGATAGCGAGCTTCCAATTAAAGTGG
GTGCCGGCATTCAGCCTCCTTTGTTAGAAGACTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

67.273

100

0.674

Multiple sequence alignment