Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACLKM2_RS00765 Genome accession   NZ_CP183899
Coordinates   172867..173457 (+) Length   196 a.a.
NCBI ID   WP_005095120.1    Uniprot ID   -
Organism   Acinetobacter pseudolwoffii strain M8_NDM_tet(X3)     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 167867..178457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM2_RS00745 - 168500..168868 (-) 369 WP_005095110.1 hypothetical protein -
  ACLKM2_RS00750 tenA 169306..169977 (-) 672 WP_411686191.1 thiaminase II -
  ACLKM2_RS00755 - 170199..171287 (+) 1089 WP_005173187.1 DUF475 domain-containing protein -
  ACLKM2_RS00760 - 171451..172815 (+) 1365 WP_100354914.1 MFS transporter -
  ACLKM2_RS00765 ssb 172867..173457 (+) 591 WP_005095120.1 single-stranded DNA-binding protein Machinery gene
  ACLKM2_RS00770 ahpC 173787..174350 (+) 564 WP_005095146.1 alkyl hydroperoxide reductase subunit C -
  ACLKM2_RS00775 - 174432..175355 (-) 924 WP_005095147.1 LysR substrate-binding domain-containing protein -
  ACLKM2_RS00780 ycaC 175499..176125 (-) 627 WP_411686189.1 isochorismate family cysteine hydrolase YcaC -
  ACLKM2_RS00785 - 176434..177312 (+) 879 WP_100329487.1 pirin family protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21392.05 Da        Isoelectric Point: 6.4810

>NTDB_id=1107033 ACLKM2_RS00765 WP_005095120.1 172867..173457(+) (ssb) [Acinetobacter pseudolwoffii strain M8_NDM_tet(X3)]
MRGVNKVILVGTLGKDPETKTFANGGSLTQFSIATSDSWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDSNRSQGEQGDNSFNQPRFNNNNQASNNQSGGYGNNPQSGYGSAPQQGGFNN
NQGGGYGNNNPSGFAPKSAPAPTAAPAADLDDDLPF

Nucleotide


Download         Length: 591 bp        

>NTDB_id=1107033 ACLKM2_RS00765 WP_005095120.1 172867..173457(+) (ssb) [Acinetobacter pseudolwoffii strain M8_NDM_tet(X3)]
ATGCGTGGTGTAAATAAAGTCATTTTAGTGGGTACTTTGGGTAAAGATCCGGAAACCAAAACTTTTGCAAATGGTGGTTC
TCTCACTCAATTTTCGATTGCTACCAGCGATTCGTGGACAGATAAAAGTACCGGTGAACGTAAAGAACAAACGGAATGGC
ACCGTATCGTGTTGCATAACCGTTTAGGCGAAATTGCGCAGCAATATCTGCGTAAAGGCTCTAAAGTATATATTGAAGGT
TCATTACGTACCCGTCAGTGGACTGATCAAAATGGTCAGGAGCGCTATACAACGGAAATCCGTGGTGATCAAATGCAGAT
GCTGGACTCGAATCGTTCACAAGGCGAGCAGGGCGACAACAGTTTTAACCAGCCACGTTTTAATAACAATAATCAGGCAA
GTAACAACCAAAGTGGCGGTTATGGCAATAATCCCCAGTCGGGTTATGGTTCAGCGCCGCAGCAAGGTGGTTTCAATAAC
AATCAGGGTGGTGGTTATGGCAACAATAATCCGAGTGGTTTTGCGCCTAAATCTGCACCTGCACCAACAGCAGCGCCTGC
AGCTGATTTAGATGATGATCTTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.792

100

0.515
  ssb Vibrio cholerae strain A1552

41.5

100

0.423
  ssb Neisseria meningitidis MC58

38.342

98.469

0.378
  ssb Neisseria gonorrhoeae MS11

38.342

98.469

0.378

Multiple sequence alignment