Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACLKM3_RS13410 Genome accession   NZ_CP183897
Coordinates   2763202..2763753 (-) Length   183 a.a.
NCBI ID   WP_019837156.1    Uniprot ID   -
Organism   Acinetobacter towneri strain M10_NDM     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2758202..2768753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM3_RS13390 - 2758724..2759554 (-) 831 WP_019837160.1 class I SAM-dependent methyltransferase -
  ACLKM3_RS13395 - 2759590..2760897 (-) 1308 WP_019837159.1 FAD-dependent oxidoreductase -
  ACLKM3_RS13400 - 2761321..2762205 (-) 885 WP_019837158.1 pirin family protein -
  ACLKM3_RS13405 ahpC 2762406..2762969 (-) 564 WP_019837157.1 alkyl hydroperoxide reductase subunit C -
  ACLKM3_RS13410 ssb 2763202..2763753 (-) 552 WP_019837156.1 single-stranded DNA-binding protein Machinery gene
  ACLKM3_RS13415 - 2763805..2765169 (-) 1365 WP_019837155.1 MFS transporter -
  ACLKM3_RS13420 - 2765384..2766469 (-) 1086 WP_019837154.1 DUF475 domain-containing protein -
  ACLKM3_RS13425 tenA 2766772..2767446 (+) 675 WP_019837153.1 thiaminase II -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20220.01 Da        Isoelectric Point: 6.4801

>NTDB_id=1107032 ACLKM3_RS13410 WP_019837156.1 2763202..2763753(-) (ssb) [Acinetobacter towneri strain M10_NDM]
MRGVNKVVLVGTLGRDPETKTFPNGGSLTQFSIATSDVWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDSSNRGQSDQQDGGFAQPRFNNNQAPATGYANQNQGGFNQNQGGGYANNNPS
GFAPKPQAAPATAPADLDDDLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=1107032 ACLKM3_RS13410 WP_019837156.1 2763202..2763753(-) (ssb) [Acinetobacter towneri strain M10_NDM]
ATGCGTGGTGTAAATAAAGTCGTTTTAGTGGGTACTTTAGGTCGTGATCCTGAAACAAAAACTTTCCCAAATGGGGGGTC
TCTCACTCAATTTTCTATCGCAACCAGTGATGTCTGGACAGACAAAAATACAGGTGAGCGTAAAGAGCAAACAGAGTGGC
ATCGCATTGTTTTACATAACCGTTTAGGCGAGATTGCGCAGCAATATTTACGCAAAGGTTCTAAAGTATATATTGAAGGT
TCATTGCGTACACGTCAGTGGACCGATCAAAACGGTCAAGAGCGTTACACCACTGAAATTCGTGGTGATCAAATGCAAAT
GCTCGATTCTTCGAACCGTGGACAATCTGACCAGCAAGATGGTGGGTTTGCTCAACCACGTTTTAACAATAACCAAGCTC
CAGCCACAGGTTATGCGAATCAAAATCAAGGTGGTTTTAACCAAAATCAGGGTGGCGGCTATGCCAACAATAACCCGAGT
GGTTTTGCACCGAAGCCACAAGCTGCGCCTGCAACTGCACCAGCAGATTTAGATGATGATTTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

54.167

100

0.568
  ssb Vibrio cholerae strain A1552

46.277

100

0.475
  ssb Neisseria meningitidis MC58

39.362

100

0.404
  ssb Neisseria gonorrhoeae MS11

38.83

100

0.399

Multiple sequence alignment