Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   ACLKM3_RS13270 Genome accession   NZ_CP183897
Coordinates   2739001..2740224 (+) Length   407 a.a.
NCBI ID   WP_019837180.1    Uniprot ID   -
Organism   Acinetobacter towneri strain M10_NDM     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 2734001..2745224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM3_RS13250 - 2734533..2736572 (-) 2040 WP_019837184.1 TonB-dependent copper receptor -
  ACLKM3_RS13255 - 2736636..2737067 (-) 432 WP_019837183.1 DUF2946 family protein -
  ACLKM3_RS13260 def 2737176..2737706 (-) 531 WP_019837182.1 peptide deformylase -
  ACLKM3_RS13265 tsaP 2737826..2738983 (+) 1158 WP_230243802.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ACLKM3_RS13270 dprA 2739001..2740224 (+) 1224 WP_019837180.1 DNA-processing protein DprA Machinery gene
  ACLKM3_RS13275 - 2740274..2740843 (+) 570 WP_019837179.1 L-threonylcarbamoyladenylate synthase -
  ACLKM3_RS13280 - 2741234..2742142 (-) 909 WP_019837177.1 DMT family transporter -
  ACLKM3_RS13285 - 2742428..2742973 (+) 546 WP_019837176.1 glutathione peroxidase -
  ACLKM3_RS13290 - 2743291..2743881 (+) 591 WP_026438115.1 hypothetical protein -
  ACLKM3_RS13295 - 2743961..2744380 (-) 420 WP_019837174.1 F0F1 ATP synthase subunit epsilon -

Sequence


Protein


Download         Length: 407 a.a.        Molecular weight: 45138.11 Da        Isoelectric Point: 6.4039

>NTDB_id=1107030 ACLKM3_RS13270 WP_019837180.1 2739001..2740224(+) (dprA) [Acinetobacter towneri strain M10_NDM]
MLNSFSPQQINSILLWYLVQHSLSSFSKLVQHYGSVAAAVQPEHLLTWSDVRIHANHLQRAKEYLSPTGQLTFEQCLNQL
QQQCDFVLTLDDADYPNQLHPYANKPPILFGQGNAQALLQAQIAIVGSRKASPHGRQVAYDFAYYLSEQGFFINSGLAQG
IDEAAHQGALQHQRTIAVMGTGLDSTYPSAHQTLRQQIVECGGAVITEFLPQTKPLQQHFPRRNRIVSGLSLGVIVAEAS
LNSGSLITAKLAAEQGKLIFAIPGHIYSEFHQGCHQLIREGAILVDHPEQVIEDLALPTQWQYQQNQIATNPNQVTAVST
ETESPTPPTKATFLSTTTKTTDTTTPHIPEHLLTLYQQLDWVGQSIDYLAQQLNLDIATLTSALMELELMGFCLQQSGLY
LRCRPHK

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=1107030 ACLKM3_RS13270 WP_019837180.1 2739001..2740224(+) (dprA) [Acinetobacter towneri strain M10_NDM]
ATGTTGAATTCATTCAGCCCACAGCAAATCAACTCCATTTTATTGTGGTATTTGGTTCAACATTCATTGTCCAGTTTTTC
CAAACTCGTACAACATTATGGTTCCGTGGCTGCCGCAGTGCAGCCCGAACACCTCCTCACGTGGTCAGATGTGCGCATTC
ATGCCAACCATCTACAACGTGCCAAAGAATATCTTAGCCCTACAGGGCAACTCACCTTTGAACAATGTCTGAATCAACTA
CAACAGCAGTGCGATTTTGTATTAACTCTAGATGATGCTGATTATCCGAATCAGTTACACCCCTATGCCAATAAGCCACC
CATTTTATTTGGACAAGGCAATGCACAGGCTTTGTTGCAAGCGCAAATTGCAATTGTCGGCAGTCGTAAAGCCAGCCCGC
ATGGCCGGCAAGTGGCTTATGATTTTGCTTATTATTTAAGTGAGCAAGGGTTCTTTATCAATAGCGGTTTGGCACAAGGT
ATTGATGAGGCCGCACATCAAGGTGCTTTGCAACATCAACGTACCATTGCAGTCATGGGCACAGGTTTGGACAGCACTTA
TCCAAGTGCACATCAAACCCTGCGCCAACAGATTGTGGAATGTGGTGGTGCCGTAATTACGGAGTTCTTACCGCAGACCA
AACCCTTACAGCAACATTTTCCGCGACGTAACCGTATTGTCAGTGGACTCAGTTTAGGCGTGATTGTTGCTGAAGCCAGC
TTAAATAGTGGCTCACTGATTACCGCAAAATTGGCAGCAGAGCAAGGTAAATTGATATTTGCCATTCCTGGACATATTTA
TAGTGAATTTCATCAAGGTTGCCATCAATTGATTCGTGAAGGTGCAATTTTAGTGGATCATCCTGAACAAGTGATTGAGG
ATTTAGCCCTACCCACCCAATGGCAATATCAACAAAACCAAATTGCGACAAACCCCAATCAGGTCACAGCAGTATCCACA
GAAACAGAATCTCCTACACCACCAACAAAAGCAACGTTTCTAAGCACCACTACAAAAACAACCGATACAACCACACCGCA
CATTCCCGAGCATTTATTGACGCTGTATCAACAACTGGATTGGGTCGGACAAAGCATCGACTACTTGGCACAGCAACTAA
ATTTAGATATTGCCACACTCACCAGCGCATTAATGGAACTGGAACTCATGGGCTTCTGTTTACAACAATCAGGTTTATAT
CTGCGTTGTCGTCCCCACAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

61.881

99.263

0.614

  dprA Acinetobacter baumannii D1279779

60.891

99.263

0.604

  dprA Acinetobacter baylyi ADP1

57.921

99.263

0.575


Multiple sequence alignment