Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   ACLKM3_RS13265 Genome accession   NZ_CP183897
Coordinates   2737826..2738983 (+) Length   385 a.a.
NCBI ID   WP_230243802.1    Uniprot ID   -
Organism   Acinetobacter towneri strain M10_NDM     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2732826..2743983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM3_RS13250 - 2734533..2736572 (-) 2040 WP_019837184.1 TonB-dependent copper receptor -
  ACLKM3_RS13255 - 2736636..2737067 (-) 432 WP_019837183.1 DUF2946 family protein -
  ACLKM3_RS13260 def 2737176..2737706 (-) 531 WP_019837182.1 peptide deformylase -
  ACLKM3_RS13265 tsaP 2737826..2738983 (+) 1158 WP_230243802.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ACLKM3_RS13270 dprA 2739001..2740224 (+) 1224 WP_019837180.1 DNA-processing protein DprA Machinery gene
  ACLKM3_RS13275 - 2740274..2740843 (+) 570 WP_019837179.1 L-threonylcarbamoyladenylate synthase -
  ACLKM3_RS13280 - 2741234..2742142 (-) 909 WP_019837177.1 DMT family transporter -
  ACLKM3_RS13285 - 2742428..2742973 (+) 546 WP_019837176.1 glutathione peroxidase -
  ACLKM3_RS13290 - 2743291..2743881 (+) 591 WP_026438115.1 hypothetical protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 42187.44 Da        Isoelectric Point: 9.2562

>NTDB_id=1107029 ACLKM3_RS13265 WP_230243802.1 2737826..2738983(+) (tsaP) [Acinetobacter towneri strain M10_NDM]
MKKVLTDTSSFRVLGFKKQVLALAVCLTVGLSAISVAEAAPARNINPPALKASAPNVYVVKKGDTLWDISKKFLNNPLRW
PEIWASNRHVKNPHWIFPGDRLLMCTYEGRPIIGKDEGDGCEGIIRRYAGKSTNLQPQIRVESLNNTIPVIPLDYIKHWL
ERSSIIAANALQGTPYILGTSDQRVLAAKGQSVYARGAGLEVGQRYGVYREGEPYMLIDANGQKFNAGIELTQVAAGIAV
RGENDITTLELTDTYNAEVRRGDRVLPIYDPMLPTLFYPTHAENVSAGGQVLRVMGSIGTAAKHSVVAIDRGTLHGVQSG
YVFSVTQKGEVVTDPKTKERVQLPGERIGNIMVFKSFDHISYAYVLDSELPIKVGASLQAPRMDD

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=1107029 ACLKM3_RS13265 WP_230243802.1 2737826..2738983(+) (tsaP) [Acinetobacter towneri strain M10_NDM]
ATGAAAAAGGTTTTGACAGACACATCCTCTTTTCGTGTCTTGGGGTTTAAAAAGCAAGTTTTAGCACTCGCAGTATGTCT
CACAGTGGGACTTAGTGCGATCAGTGTGGCTGAAGCAGCACCTGCACGAAACATCAATCCGCCTGCCTTAAAAGCCAGCG
CACCAAATGTGTATGTGGTAAAAAAAGGCGATACCTTATGGGATATTTCCAAAAAATTCCTGAACAATCCATTACGTTGG
CCTGAAATTTGGGCAAGTAACCGTCACGTAAAAAATCCTCACTGGATTTTCCCGGGTGACCGTTTATTGATGTGTACCTA
TGAAGGTCGTCCAATTATTGGTAAAGATGAAGGCGATGGTTGTGAAGGTATTATCCGTCGTTATGCAGGCAAGAGCACCA
ATTTACAACCACAAATTCGAGTGGAATCTTTAAATAATACCATTCCTGTGATTCCACTTGACTATATCAAACACTGGTTA
GAGCGCAGCAGCATTATTGCCGCAAATGCGTTACAAGGTACACCGTATATTTTAGGTACTTCTGATCAGCGTGTTTTAGC
CGCTAAAGGTCAAAGTGTGTATGCACGTGGTGCAGGTCTGGAAGTAGGTCAACGCTACGGGGTATATCGTGAAGGTGAGC
CGTACATGCTAATCGATGCCAATGGTCAAAAATTCAATGCAGGCATTGAGCTCACCCAAGTTGCTGCAGGGATTGCAGTA
CGTGGCGAAAATGACATCACCACACTTGAATTGACCGATACCTACAATGCCGAAGTGCGTCGTGGTGATCGTGTCTTACC
AATTTATGACCCAATGTTGCCAACCCTGTTCTATCCAACGCATGCTGAAAATGTCAGCGCAGGTGGGCAAGTGCTACGCG
TGATGGGCTCGATTGGTACCGCAGCAAAACACAGTGTTGTGGCGATTGATCGCGGTACATTACATGGCGTGCAATCTGGT
TATGTCTTTAGCGTAACGCAAAAAGGCGAAGTGGTCACCGACCCGAAAACCAAAGAGCGTGTTCAGCTTCCAGGCGAACG
CATTGGCAATATCATGGTCTTCAAGAGCTTTGACCACATTAGCTATGCATATGTCTTAGACAGCGAATTGCCTATTAAAG
TCGGTGCTAGCCTACAAGCACCGCGTATGGATGACTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

64.416

100

0.644

Multiple sequence alignment