Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACLKM4_RS13170 Genome accession   NZ_CP183895
Coordinates   2748740..2749306 (-) Length   188 a.a.
NCBI ID   WP_005180729.1    Uniprot ID   -
Organism   Acinetobacter indicus strain D1_NDM_tet(X3)     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2727283..2748584 2748740..2749306 flank 156


Gene organization within MGE regions


Location: 2727283..2749306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM4_RS13075 - 2727283..2727834 (+) 552 WP_107908897.1 recombinase family protein -
  ACLKM4_RS13080 - 2727843..2729042 (-) 1200 WP_107908896.1 reverse transcriptase domain-containing protein -
  ACLKM4_RS13085 - 2729753..2730235 (-) 483 Protein_2515 type ISP restriction/modification enzyme -
  ACLKM4_RS13090 - 2730290..2731222 (-) 933 WP_419867764.1 IS5-like element IS17 family transposase -
  ACLKM4_RS13095 - 2731314..2732054 (-) 741 WP_411687428.1 M48 family metallopeptidase -
  ACLKM4_RS13100 - 2732056..2735337 (-) 3282 WP_411687429.1 type I restriction endonuclease subunit R -
  ACLKM4_RS13105 - 2735353..2735961 (-) 609 WP_212639094.1 SLATT domain-containing protein -
  ACLKM4_RS13110 - 2735964..2737268 (-) 1305 WP_411687430.1 SMODS domain-containing nucleotidyltransferase -
  ACLKM4_RS13115 - 2737387..2738322 (-) 936 WP_411687431.1 endonuclease NucS domain-containing protein -
  ACLKM4_RS13120 - 2738322..2739551 (-) 1230 WP_411687432.1 restriction endonuclease subunit S -
  ACLKM4_RS13125 - 2739541..2741064 (-) 1524 WP_411687433.1 type I restriction-modification system subunit M -
  ACLKM4_RS13130 - 2741064..2741684 (-) 621 WP_411687434.1 restriction endonuclease subunit S -
  ACLKM4_RS13135 - 2741730..2742020 (-) 291 WP_180057747.1 hypothetical protein -
  ACLKM4_RS13140 - 2742287..2742493 (-) 207 WP_168542752.1 helix-turn-helix domain-containing protein -
  ACLKM4_RS13145 - 2742590..2743069 (+) 480 WP_180057752.1 hypothetical protein -
  ACLKM4_RS13150 - 2743272..2743688 (-) 417 WP_168542628.1 hypothetical protein -
  ACLKM4_RS13155 - 2743690..2745816 (-) 2127 WP_411687435.1 integrase -
  ACLKM4_RS13160 - 2745809..2747365 (-) 1557 WP_411687436.1 site-specific integrase -
  ACLKM4_RS13165 - 2747358..2748584 (-) 1227 WP_125518672.1 site-specific integrase -
  ACLKM4_RS13170 ssb 2748740..2749306 (-) 567 WP_005180729.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20640.39 Da        Isoelectric Point: 6.4819

>NTDB_id=1106993 ACLKM4_RS13170 WP_005180729.1 2748740..2749306(-) (ssb) [Acinetobacter indicus strain D1_NDM_tet(X3)]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDAWTDKTTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSGRQQGEQGDNGFSQPRFNNNQGGGYSNNNQGGYAPQAQGGFNNNNAGGGY
GNQGGYQQPKPAPAATPAPADLDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=1106993 ACLKM4_RS13170 WP_005180729.1 2748740..2749306(-) (ssb) [Acinetobacter indicus strain D1_NDM_tet(X3)]
ATGCGTGGTGTAAATAAGGTCATTTTAGTTGGTACTTTAGGTCGAGATCCAGAAACAAAAACTTTCCCGAATGGTGGCTC
GCTTACTCAATTTTCTATTGCCACCAGTGATGCGTGGACCGATAAAACCACCGGTGAGCGTAAAGAGCAAACCGAATGGC
ACCGTATTGTGCTGCATAACCGTTTAGGTGAAATCGCGCAGCAATACTTACGCAAAGGTTCAAAAGTCTATATTGAAGGT
TCGCTGCGTACCCGTCAGTGGACCGATCAGAATGGTCAGGAACGCTACACCACAGAAATTCGTGGCGAGCAAATGCAGAT
GCTGGACTCTGGTCGTCAGCAAGGTGAGCAGGGCGATAATGGTTTTAGCCAGCCACGTTTTAACAATAACCAGGGCGGTG
GTTATAGCAATAACAACCAGGGTGGCTATGCGCCGCAAGCTCAAGGCGGTTTTAACAACAATAATGCTGGTGGTGGCTAT
GGCAACCAGGGTGGTTATCAGCAACCGAAACCAGCTCCTGCTGCAACGCCTGCACCGGCAGATTTGGATGATGACTTACC
GTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.546

100

0.532
  ssb Vibrio cholerae strain A1552

43.939

100

0.463
  ssb Neisseria meningitidis MC58

38.421

100

0.388
  ssb Neisseria gonorrhoeae MS11

38.421

100

0.388

Multiple sequence alignment