Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   ACN6MY_RS17680 Genome accession   NZ_CP183879
Coordinates   3561000..3562070 (-) Length   356 a.a.
NCBI ID   WP_419881359.1    Uniprot ID   -
Organism   Peribacillus sp. B-H-3     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3556000..3567070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6MY_RS17640 (ACN6MY_17640) - 3556974..3557789 (+) 816 WP_419884203.1 YqhG family protein -
  ACN6MY_RS17645 (ACN6MY_17645) - 3557869..3558045 (-) 177 WP_419881352.1 YqzE family protein -
  ACN6MY_RS17650 (ACN6MY_17650) comGG 3558097..3558477 (-) 381 WP_419881353.1 competence type IV pilus minor pilin ComGG -
  ACN6MY_RS17655 (ACN6MY_17655) comGF 3558470..3558907 (-) 438 WP_419881354.1 competence type IV pilus minor pilin ComGF -
  ACN6MY_RS17660 (ACN6MY_17660) - 3558888..3559223 (-) 336 WP_419881355.1 hypothetical protein -
  ACN6MY_RS17665 (ACN6MY_17665) comGD 3559210..3559686 (-) 477 WP_419881356.1 competence type IV pilus minor pilin ComGD -
  ACN6MY_RS17670 (ACN6MY_17670) comGC 3559661..3559972 (-) 312 WP_419881357.1 competence type IV pilus major pilin ComGC Machinery gene
  ACN6MY_RS17675 (ACN6MY_17675) comGB 3559982..3561013 (-) 1032 WP_419881358.1 competence type IV pilus assembly protein ComGB -
  ACN6MY_RS17680 (ACN6MY_17680) comGA 3561000..3562070 (-) 1071 WP_419881359.1 competence type IV pilus ATPase ComGA Machinery gene
  ACN6MY_RS17685 (ACN6MY_17685) - 3562204..3562575 (-) 372 WP_419881360.1 hypothetical protein -
  ACN6MY_RS17690 (ACN6MY_17690) - 3562669..3563472 (-) 804 WP_419881361.1 hypothetical protein -
  ACN6MY_RS17695 (ACN6MY_17695) - 3563665..3563982 (-) 318 WP_419881362.1 hypothetical protein -
  ACN6MY_RS17700 (ACN6MY_17700) - 3564132..3564677 (+) 546 WP_419884204.1 N-acetyltransferase family protein -
  ACN6MY_RS17705 (ACN6MY_17705) - 3564743..3565627 (-) 885 WP_419881363.1 SDR family oxidoreductase -
  ACN6MY_RS17710 (ACN6MY_17710) - 3565913..3566485 (+) 573 WP_419881364.1 GNAT family N-acetyltransferase -
  ACN6MY_RS17715 (ACN6MY_17715) - 3566513..3566971 (-) 459 WP_419881365.1 NUDIX hydrolase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39863.22 Da        Isoelectric Point: 8.7303

>NTDB_id=1106643 ACN6MY_RS17680 WP_419881359.1 3561000..3562070(-) (comGA) [Peribacillus sp. B-H-3]
MESIEKTADHILSSAIRLSASDIHILPRKEGPLVQFRIDNKLYPQEVLTQDESDRLISHLKFLASMDIGEKRRPQSGAIT
MTFDNKTVGLRLSTLPASYSESLVIRLIPQHAILPLERLSLFGSTANKLIALLKHSHGMIIFTGPTGSGKTTTLYSLLHH
AKEIINRNVITLEDPIENESEKVLQVQINEKAGITYSVGLKAALRHDPDIIMVGEIRDAETAKIAVRAALTGHLILTTMH
TRDAEGAVYRLMEFGVNWLEIQQTLIAVTAQRLLELKCPFCKGPCTEACNEKKRSKRASVYELLYGKELTRVLQTAKGEK
GKIKYRTLKDEISKAVAMGYVKQEEFDRLVHEDEAK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1106643 ACN6MY_RS17680 WP_419881359.1 3561000..3562070(-) (comGA) [Peribacillus sp. B-H-3]
TTGGAATCCATTGAAAAAACAGCAGATCATATATTATCAAGTGCTATCCGCTTGTCTGCTTCTGATATCCACATTCTTCC
CCGCAAGGAAGGGCCGCTCGTCCAGTTCCGCATAGATAACAAGCTGTATCCCCAAGAAGTACTCACCCAGGATGAATCTG
ACAGGCTCATATCTCATCTTAAGTTTCTTGCATCGATGGATATCGGCGAAAAAAGAAGGCCGCAAAGCGGTGCCATCACC
ATGACATTTGACAACAAAACGGTTGGCCTCAGGCTGTCGACACTTCCCGCATCTTATTCAGAAAGCCTTGTAATCCGTTT
GATCCCGCAGCATGCAATTCTTCCTCTTGAACGCTTATCGCTCTTTGGCAGCACTGCCAATAAACTCATCGCCCTTCTTA
AACACTCCCATGGCATGATTATCTTTACCGGCCCAACTGGAAGCGGCAAAACTACCACCCTTTACTCCCTGCTCCACCAC
GCAAAAGAAATCATCAACCGAAATGTCATCACTCTTGAAGATCCCATAGAAAATGAATCTGAAAAAGTGCTGCAGGTGCA
GATTAATGAAAAAGCCGGCATTACGTATTCAGTCGGGCTTAAGGCTGCATTGAGGCATGACCCAGACATTATAATGGTCG
GTGAAATCCGTGATGCGGAAACAGCCAAAATCGCCGTAAGGGCAGCACTGACAGGGCATCTTATATTGACCACCATGCAT
ACACGTGATGCAGAAGGAGCGGTTTACCGCCTGATGGAATTTGGCGTAAACTGGCTTGAAATACAGCAGACACTGATTGC
TGTAACTGCACAGCGGCTATTAGAGCTAAAATGTCCTTTTTGCAAAGGGCCTTGCACAGAAGCATGTAACGAGAAAAAAA
GAAGCAAGCGGGCAAGCGTGTATGAATTGCTGTACGGAAAAGAGCTTACCCGTGTACTGCAGACAGCGAAGGGCGAAAAA
GGAAAAATAAAGTATCGTACGCTGAAGGACGAAATCAGCAAGGCGGTGGCCATGGGATATGTAAAGCAAGAGGAATTTGA
CCGGCTGGTGCATGAAGATGAAGCGAAGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

55.775

99.719

0.556
  pilB Haemophilus influenzae 86-028NP

37.36

100

0.374
  pilB Haemophilus influenzae Rd KW20

36.798

100

0.368

Multiple sequence alignment