Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACN6MY_RS01880 Genome accession   NZ_CP183879
Coordinates   418193..418717 (-) Length   174 a.a.
NCBI ID   WP_419882571.1    Uniprot ID   -
Organism   Peribacillus sp. B-H-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 413193..423717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6MY_RS01860 (ACN6MY_01860) rplI 414198..414647 (-) 450 WP_071349574.1 50S ribosomal protein L9 -
  ACN6MY_RS01865 (ACN6MY_01865) - 414644..416614 (-) 1971 WP_419882569.1 DHH family phosphoesterase -
  ACN6MY_RS01870 (ACN6MY_01870) - 416660..417607 (-) 948 WP_419882570.1 YybS family protein -
  ACN6MY_RS01875 (ACN6MY_01875) rpsR 417911..418150 (-) 240 WP_071349572.1 30S ribosomal protein S18 -
  ACN6MY_RS01880 (ACN6MY_01880) ssbA 418193..418717 (-) 525 WP_419882571.1 single-stranded DNA-binding protein Machinery gene
  ACN6MY_RS01885 (ACN6MY_01885) rpsF 418778..419062 (-) 285 WP_071349570.1 30S ribosomal protein S6 -
  ACN6MY_RS01890 (ACN6MY_01890) ychF 419230..420330 (-) 1101 WP_419882572.1 redox-regulated ATPase YchF -
  ACN6MY_RS01895 (ACN6MY_01895) - 420495..420692 (-) 198 WP_071353230.1 DUF951 domain-containing protein -
  ACN6MY_RS01900 (ACN6MY_01900) - 420719..421576 (-) 858 WP_419882573.1 mechanosensitive ion channel family protein -
  ACN6MY_RS01905 (ACN6MY_01905) yyaC 421906..422532 (+) 627 WP_419882574.1 spore protease YyaC -
  ACN6MY_RS01910 (ACN6MY_01910) - 422596..423309 (-) 714 WP_419882575.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19513.25 Da        Isoelectric Point: 4.8195

>NTDB_id=1106612 ACN6MY_RS01880 WP_419882571.1 418193..418717(-) (ssbA) [Peribacillus sp. B-H-3]
MMNRVILVGRLTKDPELRYTPNGVPVATFTLAVNRAFTNQQGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRVQTR
NYEGQDGKRVYVTEILAESVQFLEPRSSSAGERNDGGSYGNQKSYNNDNPFGQNQNQNQRNNNNNNNNNYTRVDDDPFAS
DGKTIDISDDDLPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=1106612 ACN6MY_RS01880 WP_419882571.1 418193..418717(-) (ssbA) [Peribacillus sp. B-H-3]
ATGATGAATCGCGTGATTTTAGTAGGACGCTTAACTAAAGATCCTGAACTAAGATATACACCGAATGGGGTTCCTGTAGC
AACGTTCACTTTGGCTGTTAACCGTGCATTTACGAATCAGCAGGGAGAACGCGAAGCAGACTTCATTAATTGTGTAGTTT
GGCGTAAACCGGCAGAAAATGTAGCTAACTTCCTTAAAAAAGGAAGCCTGGCTGGCGTGGATGGACGAGTCCAGACACGT
AATTATGAAGGACAAGACGGCAAACGAGTGTATGTAACAGAGATTCTGGCTGAGAGCGTTCAATTTCTTGAACCACGAAG
CAGTTCAGCGGGTGAAAGAAATGATGGCGGTTCTTACGGAAATCAGAAAAGCTACAATAATGATAATCCGTTTGGACAAA
ATCAGAATCAGAATCAACGCAATAACAACAACAACAACAACAACAACTACACTCGTGTAGACGATGATCCATTTGCCAGC
GACGGCAAAACCATCGACATTTCAGATGACGATCTTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68.715

100

0.707
  ssb Latilactobacillus sakei subsp. sakei 23K

54.023

100

0.54
  ssb Glaesserella parasuis strain SC1401

37.5

100

0.397
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

60.92

0.374

Multiple sequence alignment