Detailed information NTG1106229

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: ACM62G_RS20400
• Genome accession: NZ_CP183808
• Coordinates: 4403958..4406171 (+)
• Length: 737 a.a.
• NCBI ID: WP_419735414.1
• Uniprot ID: -
• Organism: Pseudomonas sp. COR18
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4398958..4411171

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACM62G_RS20375 (ACM62G_20375)	-	4399945..4400604 (+)	660	WP_419735412.1	transglutaminase-like domain-containing protein	-
ACM62G_RS20380 (ACM62G_20380)	-	4400648..4401271 (+)	624	WP_054061438.1	glutathione S-transferase family protein	-
ACM62G_RS20385 (ACM62G_20385)	-	4401451..4402383 (+)	933	WP_054061437.1	ABC transporter ATP-binding protein	-
ACM62G_RS20390 (ACM62G_20390)	-	4402380..4403159 (+)	780	WP_419735413.1	ABC transporter permease	-
ACM62G_RS20395 (ACM62G_20395)	-	4403300..4403821 (-)	522	WP_054061435.1	DUF2062 domain-containing protein	-
ACM62G_RS20400 (ACM62G_20400)	comA	4403958..4406171 (+)	2214	WP_419735414.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
ACM62G_RS20405 (ACM62G_20405)	exbB	4406333..4406968 (+)	636	WP_054061405.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
ACM62G_RS20410 (ACM62G_20410)	-	4406965..4407393 (+)	429	WP_054061406.1	ExbD/TolR family protein	-
ACM62G_RS20415 (ACM62G_20415)	lpxK	4407393..4408403 (+)	1011	WP_273825748.1	tetraacyldisaccharide 4'-kinase	-
ACM62G_RS20420 (ACM62G_20420)	-	4408430..4408615 (+)	186	WP_017905777.1	Trm112 family protein	-
ACM62G_RS20425 (ACM62G_20425)	kdsB	4408612..4409376 (+)	765	WP_419735415.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
ACM62G_RS20430 (ACM62G_20430)	-	4409376..4409840 (+)	465	WP_419735416.1	low molecular weight protein-tyrosine-phosphatase	-
ACM62G_RS20435 (ACM62G_20435)	murB	4409837..4410856 (+)	1020	WP_419735417.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 737 a.a.
• Molecular weight: 79831.50 Da
• Isoelectric Point: 10.3884

>NTDB_id=1106229 ACM62G_RS20400 WP_419735414.1 4403958..4406171(+) (comA) [Pseudomonas sp. COR18]
MRTGMLALAAGLLSLRFLPQLPPLGWLPVLSLLGLMLLPFRSYPVALVLFGFSWACLQAHLALSDRLAAELDGQTLWLEG
QVVGLPENDGAVQRFVLEDASSRRTLLPRRMRLAWYGGPAVGSGERWRLAVKLKSPSGLLNPHGFDREAWLLAQRIGATG
TIKDGQRLAASPGSWRDGIRQRLLAVDAWGQSATLVALVLGDGSGLSPDTWRVLQDTGTVHLLVISGQHIGLFAALVYAL
VAGLARYGLWPRHLPWLPWACGLAFAAALGYGLLAGFGVPVRRACAMIGMVLLWRLRYRHLGVSWPLLVALNLVLLVEPL
ASLRPGFWLSFAAVAVLVFCFAGRLGAWSLWQTWTRAQWTIALGLLPWLLALGLPISLSGPWVNLVAVPWISLAVLPLAL
LGTLTLTLPWIGEALLWLAGGLLEILFQGLAQVATRVPAWLPGTLAPWAWGLGSLGVLLLLLPAGVPLRPLGWPLVAMVL
CSPPSRVPQGQAEIWQLDVGQGLAILVRTRHHNLLYDAGPRFGAFDLGQRVVLPTLRKLGVRELDLMLISHADADHAGGA
LAVRNGMPVNQVISGDAPGLPAPLHAGTCPSGERWQWDGVSFGLWQWAAAQDSNQRSCVLQIEARGERLLLTGDIDTHAE
QALLDSPLAVATDWLQAPHHGSRSSSSMNFLQRLAPRAVLISRGRGNSFGHPHPQVMARYRALGMAVHDSAEQGAVRLVL
GAFGDAQSQREDKRFWR

Nucleotide

• Length: 2214 bp

>NTDB_id=1106229 ACM62G_RS20400 WP_419735414.1 4403958..4406171(+) (comA) [Pseudomonas sp. COR18]
ATGCGCACAGGGATGTTGGCGCTGGCGGCGGGCCTGTTGAGCCTGCGTTTTCTGCCGCAGTTGCCGCCGCTCGGGTGGCT
GCCGGTGTTGTCGCTGCTCGGCCTGATGCTGTTGCCGTTTCGCAGCTATCCGGTCGCGCTGGTGCTGTTCGGTTTCAGTT
GGGCCTGCCTGCAGGCTCACCTGGCCTTGAGTGACCGCCTGGCAGCGGAGCTGGACGGCCAGACACTGTGGCTGGAAGGG
CAGGTGGTGGGACTGCCGGAAAACGATGGAGCGGTGCAACGCTTCGTGCTGGAAGACGCGAGCTCCCGGCGCACGCTGCT
GCCGCGGCGCATGCGCCTGGCCTGGTACGGCGGGCCCGCGGTCGGCAGTGGCGAGCGCTGGCGGCTGGCGGTCAAGCTCA
AGTCGCCGAGCGGGCTGCTCAATCCCCATGGCTTCGACCGTGAGGCCTGGTTGCTGGCCCAGCGGATCGGCGCCACCGGT
ACCATCAAGGACGGCCAGCGACTGGCCGCATCGCCAGGGTCCTGGCGCGACGGGATTCGTCAGCGCCTGCTGGCGGTCGA
TGCCTGGGGCCAGTCGGCGACCCTGGTGGCGCTGGTGCTGGGCGATGGTTCGGGTTTGTCGCCTGACACCTGGCGCGTCC
TGCAGGACACCGGCACCGTGCACCTGCTGGTGATTTCCGGGCAGCATATCGGGCTGTTCGCCGCACTGGTCTATGCCCTG
GTGGCGGGGCTGGCGCGTTATGGCCTGTGGCCGCGGCACCTGCCCTGGCTACCCTGGGCCTGCGGCCTGGCCTTTGCCGC
GGCGCTGGGCTACGGATTGCTGGCCGGCTTTGGCGTCCCGGTGCGCCGGGCCTGCGCGATGATCGGCATGGTGCTGCTCT
GGCGCCTGCGCTACCGCCATCTGGGGGTGTCGTGGCCGTTGCTGGTGGCGCTGAACCTGGTCCTGCTGGTCGAGCCCCTG
GCCAGCCTGCGGCCGGGTTTCTGGCTGTCGTTCGCCGCAGTGGCGGTGCTGGTCTTCTGTTTCGCCGGCCGGCTGGGGGC
CTGGAGCCTCTGGCAAACCTGGACCCGCGCGCAATGGACCATCGCCCTCGGCCTGCTGCCGTGGCTGCTGGCGCTCGGCC
TGCCCATCAGCCTCAGCGGCCCGTGGGTCAACCTGGTCGCGGTGCCCTGGATCAGCCTTGCGGTACTGCCGCTGGCCTTG
CTCGGGACCCTGACCTTGACGCTGCCCTGGATCGGTGAGGCGCTGTTGTGGCTGGCCGGCGGCCTGCTGGAAATCCTGTT
CCAGGGGTTGGCCCAGGTGGCGACACGGGTACCGGCCTGGCTACCCGGAACCCTTGCACCCTGGGCCTGGGGCCTGGGCA
GCCTGGGTGTTCTGCTGTTGTTGCTGCCCGCGGGCGTGCCGCTACGGCCGCTGGGCTGGCCGCTGGTGGCCATGGTGTTG
TGCTCGCCGCCGTCCAGGGTGCCGCAAGGGCAGGCCGAAATCTGGCAACTGGACGTCGGGCAAGGCCTGGCGATCCTGGT
CCGTACCCGCCATCACAACCTGCTGTATGACGCGGGGCCGCGCTTCGGCGCGTTCGACCTGGGCCAGCGGGTGGTCCTGC
CAACGCTGCGCAAGCTGGGGGTACGCGAGCTTGACCTGATGCTGATCAGTCACGCCGATGCCGACCATGCCGGTGGTGCC
CTGGCGGTCCGCAACGGTATGCCGGTGAACCAGGTGATCAGTGGTGATGCCCCGGGATTGCCGGCACCCCTGCATGCCGG
TACCTGCCCCAGTGGCGAGCGCTGGCAATGGGACGGAGTGAGTTTCGGGCTCTGGCAATGGGCCGCGGCGCAGGACAGCA
ACCAGCGTTCCTGCGTGCTGCAGATCGAGGCCCGGGGGGAGCGGCTGCTGCTGACCGGAGACATCGACACCCACGCCGAG
CAGGCCTTGCTGGACAGTCCGCTGGCGGTCGCCACCGACTGGCTGCAGGCCCCTCATCATGGCAGCCGCAGTTCCTCGTC
GATGAACTTTCTCCAGCGACTGGCGCCGAGGGCCGTGCTGATTTCCCGGGGTCGTGGAAACAGCTTCGGCCATCCGCATC
CGCAGGTGATGGCTCGTTACCGGGCATTGGGGATGGCCGTACATGACAGTGCCGAGCAGGGTGCGGTGCGCCTGGTGCTG
GGGGCTTTTGGCGATGCGCAGTCGCAGCGCGAGGACAAGAGATTCTGGCGTTGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-677)

• Competence protein (Competence) (198-462)

• Domain of unknown function (DUF4131) (DUF4131) (20-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.953	97.422	0.613
comA	Ralstonia pseudosolanacearum GMI1000	35.308	100	0.404