Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACM62G_RS20405 Genome accession   NZ_CP183808
Coordinates   4406333..4406968 (+) Length   211 a.a.
NCBI ID   WP_054061405.1    Uniprot ID   -
Organism   Pseudomonas sp. COR18     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4401333..4411968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM62G_RS20385 (ACM62G_20385) - 4401451..4402383 (+) 933 WP_054061437.1 ABC transporter ATP-binding protein -
  ACM62G_RS20390 (ACM62G_20390) - 4402380..4403159 (+) 780 WP_419735413.1 ABC transporter permease -
  ACM62G_RS20395 (ACM62G_20395) - 4403300..4403821 (-) 522 WP_054061435.1 DUF2062 domain-containing protein -
  ACM62G_RS20400 (ACM62G_20400) comA 4403958..4406171 (+) 2214 WP_419735414.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACM62G_RS20405 (ACM62G_20405) exbB 4406333..4406968 (+) 636 WP_054061405.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACM62G_RS20410 (ACM62G_20410) - 4406965..4407393 (+) 429 WP_054061406.1 ExbD/TolR family protein -
  ACM62G_RS20415 (ACM62G_20415) lpxK 4407393..4408403 (+) 1011 WP_273825748.1 tetraacyldisaccharide 4'-kinase -
  ACM62G_RS20420 (ACM62G_20420) - 4408430..4408615 (+) 186 WP_017905777.1 Trm112 family protein -
  ACM62G_RS20425 (ACM62G_20425) kdsB 4408612..4409376 (+) 765 WP_419735415.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACM62G_RS20430 (ACM62G_20430) - 4409376..4409840 (+) 465 WP_419735416.1 low molecular weight protein-tyrosine-phosphatase -
  ACM62G_RS20435 (ACM62G_20435) murB 4409837..4410856 (+) 1020 WP_419735417.1 UDP-N-acetylmuramate dehydrogenase -
  ACM62G_RS20440 (ACM62G_20440) - 4411108..4411578 (+) 471 WP_054061193.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22925.07 Da        Isoelectric Point: 7.3616

>NTDB_id=1106230 ACM62G_RS20405 WP_054061405.1 4406333..4406968(+) (exbB) [Pseudomonas sp. COR18]
MWELVKSGGWMMLPIILSSIAAVGIVAERLWTLRASRVTPEHLLGQVWVWIRDKQLDKEKLKQLRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMSPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
SGLIVGIPAVFFHRFLQRRIDELVVGMEQQAIKLVEVVQGDRDVEMPGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1106230 ACM62G_RS20405 WP_054061405.1 4406333..4406968(+) (exbB) [Pseudomonas sp. COR18]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCCGCCGTGGGTATCGTCGC
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGGGTGACCCCGGAGCATCTGCTGGGGCAGGTCTGGGTGTGGATCCGTGACA
AGCAGCTGGACAAGGAAAAACTCAAGCAACTGCGCGCCGACTCGCCCCTGGGTGAAATCCTCGCCGCGGGCCTGGCGAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCCGCCGCCCGGGTGATCCATGAACTGGAGCGCTACAT
CAACGCCCTCGGCACCATCGCCGCCATGTCGCCGCTGCTCGGCCTGCTCGGTACGGTGCTGGGCATGATCGATATCTTCA
GCTCGTTCATGGGCTCGGGCATGACCACCAATGCGGCCGTCCTCGCCGGCGGTATCTCCAAGGCGCTGATCACCACCGCA
TCAGGCCTGATCGTCGGTATTCCCGCGGTGTTCTTCCACCGCTTCCTGCAACGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGCAGGCGATCAAGCTGGTCGAAGTGGTCCAGGGCGACCGCGATGTGGAAATGCCCGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825

Multiple sequence alignment