Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACAM27_RS17235 Genome accession   NZ_AP031605
Coordinates   3801813..3802337 (-) Length   174 a.a.
NCBI ID   WP_113880451.1    Uniprot ID   -
Organism   Marinobacter sp. RI1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3796813..3807337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM27_RS17210 (MspRI1_34120) mshL 3797327..3799045 (-) 1719 WP_369612367.1 pilus (MSHA type) biogenesis protein MshL -
  ACAM27_RS17215 (MspRI1_34130) - 3799042..3799371 (-) 330 WP_369612368.1 hypothetical protein -
  ACAM27_RS17220 (MspRI1_34140) - 3799373..3800062 (-) 690 WP_369612369.1 MSHA biogenesis protein MshJ -
  ACAM27_RS17225 (MspRI1_34150) - 3800059..3800676 (-) 618 WP_369612370.1 PilN domain-containing protein -
  ACAM27_RS17230 (MspRI1_34160) - 3800676..3801602 (-) 927 WP_369612371.1 biogenesis protein MshI -
  ACAM27_RS17235 (MspRI1_34170) ssb 3801813..3802337 (-) 525 WP_113880451.1 single-stranded DNA-binding protein Machinery gene
  ACAM27_RS17240 (MspRI1_34180) - 3802395..3803765 (-) 1371 WP_369612372.1 MFS transporter -
  ACAM27_RS17245 (MspRI1_34190) uvrA 3803930..3806752 (+) 2823 WP_222180713.1 excinuclease ABC subunit UvrA -
  ACAM27_RS17250 (MspRI1_34200) rplQ 3806825..3807220 (-) 396 WP_023007570.1 50S ribosomal protein L17 -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19070.16 Da        Isoelectric Point: 4.9464

>NTDB_id=110622 ACAM27_RS17235 WP_113880451.1 3801813..3802337(-) (ssb) [Marinobacter sp. RI1]
MARGVNKVILIGNLGQDPDTRYTPNGNAVVNLNLATDESYKDRQTGQLVPKTEWHRVVLFGKVAEVAGQYLRKGSKVYIE
GKLQTRKWQNKEGQDVYTTEVVVDINGQMQMLDSRGSEGGMNPGAPQGRPQQQPQYNAPPQQGGQAGGYNNPAPQQQGGG
MPEPIDDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=110622 ACAM27_RS17235 WP_113880451.1 3801813..3802337(-) (ssb) [Marinobacter sp. RI1]
ATGGCACGAGGCGTAAACAAGGTAATTCTCATTGGTAACCTGGGGCAGGACCCGGACACTCGTTATACCCCCAACGGCAA
CGCTGTGGTTAACCTGAACCTCGCCACAGACGAGAGTTACAAGGATCGCCAGACCGGACAGCTGGTGCCGAAGACCGAGT
GGCATCGGGTTGTGCTGTTCGGCAAGGTGGCTGAAGTGGCTGGGCAATACCTGCGCAAAGGCTCCAAGGTCTACATTGAA
GGCAAGCTGCAGACCCGGAAATGGCAGAACAAGGAAGGGCAGGATGTCTACACCACTGAAGTGGTTGTGGATATCAATGG
CCAGATGCAGATGCTGGACAGCCGTGGCTCTGAGGGCGGTATGAATCCGGGGGCGCCCCAGGGACGGCCGCAGCAACAGC
CGCAATACAATGCGCCGCCCCAGCAGGGTGGACAGGCTGGTGGCTACAACAACCCGGCACCCCAGCAGCAAGGTGGCGGC
ATGCCTGAGCCGATTGATGATTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.714

100

0.58
  ssb Glaesserella parasuis strain SC1401

53.514

100

0.569
  ssb Neisseria meningitidis MC58

44.444

100

0.46
  ssb Neisseria gonorrhoeae MS11

44.444

100

0.46

Multiple sequence alignment