Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACN6IU_RS11465 | Genome accession | NZ_CP183804 |
| Coordinates | 2233477..2233941 (-) | Length | 154 a.a. |
| NCBI ID | WP_016570065.1 | Uniprot ID | - |
| Organism | Pasteurella multocida strain 171865 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2227958..2278182 | 2233477..2233941 | within | 0 |
Gene organization within MGE regions
Location: 2227958..2278182
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACN6IU_RS11410 | - | 2227958..2228947 (+) | 990 | WP_195188432.1 | tyrosine-type recombinase/integrase | - |
| ACN6IU_RS11415 | - | 2228944..2229225 (-) | 282 | WP_047918098.1 | hypothetical protein | - |
| ACN6IU_RS11420 | - | 2229264..2229560 (-) | 297 | WP_139617331.1 | hypothetical protein | - |
| ACN6IU_RS11425 | - | 2229565..2230035 (-) | 471 | WP_250021891.1 | pyruvate kinase | - |
| ACN6IU_RS11430 | - | 2230039..2230335 (-) | 297 | WP_015691047.1 | hypothetical protein | - |
| ACN6IU_RS11435 | - | 2230380..2230736 (-) | 357 | WP_015691049.1 | hypothetical protein | - |
| ACN6IU_RS11440 | - | 2230745..2231233 (-) | 489 | WP_419731318.1 | DUF551 domain-containing protein | - |
| ACN6IU_RS11445 | - | 2231368..2231967 (-) | 600 | WP_419731319.1 | hypothetical protein | - |
| ACN6IU_RS11450 | - | 2232018..2232806 (-) | 789 | WP_014391448.1 | DUF2303 family protein | - |
| ACN6IU_RS11455 | - | 2232878..2233231 (-) | 354 | WP_016570064.1 | hypothetical protein | - |
| ACN6IU_RS11460 | - | 2233274..2233465 (-) | 192 | WP_016533530.1 | hypothetical protein | - |
| ACN6IU_RS11465 | ssb | 2233477..2233941 (-) | 465 | WP_016570065.1 | single-stranded DNA-binding protein | Machinery gene |
| ACN6IU_RS11470 | - | 2233945..2234556 (-) | 612 | WP_064775601.1 | YqaJ viral recombinase family protein | - |
| ACN6IU_RS11475 | bet | 2234549..2235400 (-) | 852 | WP_016533454.1 | phage recombination protein Bet | - |
| ACN6IU_RS11480 | - | 2235404..2236390 (-) | 987 | WP_016570067.1 | hypothetical protein | - |
| ACN6IU_RS11485 | - | 2236393..2236554 (-) | 162 | WP_014390707.1 | hypothetical protein | - |
| ACN6IU_RS11490 | - | 2236568..2236804 (-) | 237 | WP_016570068.1 | hypothetical protein | - |
| ACN6IU_RS11495 | - | 2236791..2237075 (-) | 285 | WP_016570069.1 | hypothetical protein | - |
| ACN6IU_RS11500 | - | 2237223..2237453 (+) | 231 | WP_223251317.1 | hypothetical protein | - |
| ACN6IU_RS11505 | - | 2237515..2238156 (-) | 642 | WP_419731320.1 | Bro-N domain-containing protein | - |
| ACN6IU_RS11510 | - | 2238441..2239277 (-) | 837 | WP_014390712.1 | KilA-N domain-containing protein | - |
| ACN6IU_RS11515 | - | 2239489..2239614 (+) | 126 | WP_014391103.1 | hypothetical protein | - |
| ACN6IU_RS11520 | - | 2239615..2240148 (-) | 534 | WP_014391102.1 | hypothetical protein | - |
| ACN6IU_RS11525 | - | 2240236..2240499 (-) | 264 | WP_014391456.1 | hypothetical protein | - |
| ACN6IU_RS11530 | - | 2240724..2240954 (-) | 231 | WP_016533507.1 | hypothetical protein | - |
| ACN6IU_RS11535 | - | 2241568..2241951 (-) | 384 | WP_016533476.1 | hypothetical protein | - |
| ACN6IU_RS11540 | - | 2241948..2242427 (-) | 480 | WP_016533477.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| ACN6IU_RS11545 | - | 2242430..2242693 (-) | 264 | WP_016533478.1 | type II toxin-antitoxin system HicA family toxin | - |
| ACN6IU_RS11550 | - | 2242876..2243553 (-) | 678 | WP_016569989.1 | XRE family transcriptional regulator | - |
| ACN6IU_RS11555 | - | 2243677..2243874 (+) | 198 | WP_014390719.1 | helix-turn-helix domain-containing protein | - |
| ACN6IU_RS11560 | - | 2243923..2244375 (+) | 453 | WP_419731321.1 | phage regulatory CII family protein | - |
| ACN6IU_RS11565 | - | 2244442..2244576 (+) | 135 | WP_016569987.1 | hypothetical protein | - |
| ACN6IU_RS11570 | - | 2244628..2244808 (+) | 181 | Protein_2244 | hypothetical protein | - |
| ACN6IU_RS11575 | - | 2244885..2245238 (+) | 354 | WP_014390722.1 | HNH endonuclease | - |
| ACN6IU_RS11580 | - | 2245240..2246142 (+) | 903 | WP_016533442.1 | hypothetical protein | - |
| ACN6IU_RS11585 | - | 2246142..2246831 (+) | 690 | WP_419731389.1 | replication protein P | - |
| ACN6IU_RS11590 | - | 2246835..2247371 (+) | 537 | WP_267750703.1 | phage N-6-adenine-methyltransferase | - |
| ACN6IU_RS11595 | - | 2247361..2247819 (+) | 459 | WP_267750701.1 | recombination protein NinB | - |
| ACN6IU_RS11600 | - | 2247893..2248474 (+) | 582 | WP_139638721.1 | recombination protein NinG | - |
| ACN6IU_RS11605 | - | 2248471..2248974 (+) | 504 | WP_228767745.1 | antiterminator Q family protein | - |
| ACN6IU_RS11610 | - | 2249095..2249289 (+) | 195 | WP_064964940.1 | hypothetical protein | - |
| ACN6IU_RS11615 | - | 2249325..2249882 (-) | 558 | WP_079157770.1 | hypothetical protein | - |
| ACN6IU_RS11620 | - | 2249999..2250259 (+) | 261 | WP_014391475.1 | HP1 family phage holin | - |
| ACN6IU_RS11625 | - | 2250256..2250786 (+) | 531 | WP_005725607.1 | lysozyme | - |
| ACN6IU_RS11630 | - | 2250759..2251082 (+) | 324 | WP_419731322.1 | DUF2570 family protein | - |
| ACN6IU_RS11635 | lysC | 2250988..2251269 (+) | 282 | WP_419731323.1 | Rz1-like lysis system protein LysC | - |
| ACN6IU_RS11640 | - | 2251304..2251738 (-) | 435 | WP_014390736.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| ACN6IU_RS11645 | - | 2251767..2251949 (-) | 183 | WP_016533497.1 | type II toxin-antitoxin system HicA family toxin | - |
| ACN6IU_RS11650 | - | 2252032..2252529 (+) | 498 | WP_014390737.1 | terminase | - |
| ACN6IU_RS11655 | - | 2252513..2253748 (+) | 1236 | WP_419731324.1 | PBSX family phage terminase large subunit | - |
| ACN6IU_RS11660 | - | 2253758..2255161 (+) | 1404 | WP_015691068.1 | DUF4055 domain-containing protein | - |
| ACN6IU_RS11665 | - | 2255151..2256752 (+) | 1602 | WP_419731325.1 | minor capsid protein | - |
| ACN6IU_RS11670 | - | 2256755..2256973 (+) | 219 | WP_015691070.1 | hypothetical protein | - |
| ACN6IU_RS11675 | - | 2256948..2257382 (+) | 435 | WP_015691071.1 | HD domain-containing protein | - |
| ACN6IU_RS11680 | - | 2257422..2257589 (+) | 168 | WP_016533111.1 | hypothetical protein | - |
| ACN6IU_RS11685 | - | 2257717..2258502 (+) | 786 | WP_238300405.1 | hypothetical protein | - |
| ACN6IU_RS11690 | - | 2258520..2259677 (+) | 1158 | WP_064964915.1 | P22 phage major capsid protein family protein | - |
| ACN6IU_RS11695 | - | 2259735..2259971 (+) | 237 | WP_238300401.1 | HeH/LEM domain-containing protein | - |
| ACN6IU_RS11700 | - | 2259988..2260455 (+) | 468 | WP_015691076.1 | DnaT-like ssDNA-binding protein | - |
| ACN6IU_RS11705 | - | 2260457..2260831 (+) | 375 | WP_015691077.1 | hypothetical protein | - |
| ACN6IU_RS11710 | - | 2260833..2261234 (+) | 402 | WP_016533105.1 | HK97 gp10 family phage protein | - |
| ACN6IU_RS11715 | - | 2261234..2261626 (+) | 393 | WP_015691079.1 | phage tail terminator-like protein | - |
| ACN6IU_RS11720 | - | 2261639..2262655 (+) | 1017 | WP_016533104.1 | phage tail tube protein | - |
| ACN6IU_RS11725 | - | 2262728..2263144 (+) | 417 | WP_016533103.1 | hypothetical protein | - |
| ACN6IU_RS11730 | - | 2263258..2263473 (+) | 216 | WP_419731390.1 | phage tail assembly chaperone | - |
| ACN6IU_RS11735 | - | 2263490..2263843 (+) | 354 | WP_231140379.1 | phage tail protein | - |
| ACN6IU_RS11740 | - | 2264148..2264843 (+) | 696 | WP_238300398.1 | hypothetical protein | - |
| ACN6IU_RS11745 | - | 2264966..2267680 (+) | 2715 | WP_064775656.1 | tape measure protein | - |
| ACN6IU_RS11750 | - | 2267677..2268381 (+) | 705 | WP_139617304.1 | phage minor tail protein L | - |
| ACN6IU_RS11755 | - | 2268386..2269129 (+) | 744 | WP_102827075.1 | C40 family peptidase | - |
| ACN6IU_RS11760 | - | 2269072..2269662 (+) | 591 | WP_419731326.1 | tail assembly protein | - |
| ACN6IU_RS11765 | gpJ | 2269666..2275560 (+) | 5895 | WP_419731327.1 | TipJ family phage tail tip protein | - |
| ACN6IU_RS11770 | - | 2275608..2275931 (+) | 324 | WP_139616918.1 | hypothetical protein | - |
| ACN6IU_RS11775 | - | 2276357..2277193 (+) | 837 | WP_014390712.1 | KilA-N domain-containing protein | - |
| ACN6IU_RS11780 | - | 2277496..2278182 (+) | 687 | WP_250021904.1 | KilA-N domain-containing protein | - |
Sequence
Protein
Download Length: 154 a.a. Molecular weight: 17207.00 Da Isoelectric Point: 6.9818
>NTDB_id=1106200 ACN6IU_RS11465 WP_016570065.1 2233477..2233941(-) (ssb) [Pasteurella multocida strain 171865]
MAGVNKVIIVGNLGNDPDVRTMPNGDAVAKISVATSESWIDKNTNERKTQTEWHSIVFYRRQAEICGQYLKKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRQDSQAQANAQANAQAPQNNAYANAKAGKPVQQADSFEDDSIPF
MAGVNKVIIVGNLGNDPDVRTMPNGDAVAKISVATSESWIDKNTNERKTQTEWHSIVFYRRQAEICGQYLKKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRQDSQAQANAQANAQAPQNNAYANAKAGKPVQQADSFEDDSIPF
Nucleotide
Download Length: 465 bp
>NTDB_id=1106200 ACN6IU_RS11465 WP_016570065.1 2233477..2233941(-) (ssb) [Pasteurella multocida strain 171865]
ATGGCTGGGGTAAATAAAGTAATTATCGTCGGGAATTTGGGAAACGATCCTGATGTCCGCACAATGCCAAATGGCGACGC
AGTGGCAAAAATTAGTGTGGCCACGAGCGAAAGTTGGATCGACAAAAACACGAACGAGCGAAAAACGCAGACAGAATGGC
ACTCTATCGTGTTTTATCGCCGCCAAGCAGAAATTTGCGGGCAGTATCTCAAAAAAGGATCGAAAGTGTATGTGGAAGGG
CGTTTAAGAACTCGTAAATGGCAAGACCAAAACGGGCAAGACCGCTACACCACTGAAATCCAAGGCGACGTATTGCAGAT
GTTAGACAGTCGCCAAGATTCACAAGCACAAGCTAACGCACAAGCTAACGCACAAGCACCGCAAAACAATGCTTATGCCA
ATGCGAAAGCTGGAAAGCCAGTGCAACAGGCTGATAGTTTTGAAGATGATAGCATACCTTTTTAA
ATGGCTGGGGTAAATAAAGTAATTATCGTCGGGAATTTGGGAAACGATCCTGATGTCCGCACAATGCCAAATGGCGACGC
AGTGGCAAAAATTAGTGTGGCCACGAGCGAAAGTTGGATCGACAAAAACACGAACGAGCGAAAAACGCAGACAGAATGGC
ACTCTATCGTGTTTTATCGCCGCCAAGCAGAAATTTGCGGGCAGTATCTCAAAAAAGGATCGAAAGTGTATGTGGAAGGG
CGTTTAAGAACTCGTAAATGGCAAGACCAAAACGGGCAAGACCGCTACACCACTGAAATCCAAGGCGACGTATTGCAGAT
GTTAGACAGTCGCCAAGATTCACAAGCACAAGCTAACGCACAAGCTAACGCACAAGCACCGCAAAACAATGCTTATGCCA
ATGCGAAAGCTGGAAAGCCAGTGCAACAGGCTGATAGTTTTGAAGATGATAGCATACCTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
62.983 |
100 |
0.74 |
| ssb | Vibrio cholerae strain A1552 |
48.276 |
100 |
0.545 |
| ssb | Neisseria meningitidis MC58 |
42.775 |
100 |
0.481 |
| ssb | Neisseria gonorrhoeae MS11 |
42.775 |
100 |
0.481 |