Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   V3C22_RS05395 Genome accession   NZ_CP183775
Coordinates   1124437..1125126 (-) Length   229 a.a.
NCBI ID   WP_226706963.1    Uniprot ID   -
Organism   Streptococcus mutans strain Xc     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1119437..1130126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3C22_RS05365 (V3C22_05365) - 1119687..1120445 (-) 759 WP_002262204.1 inositol monophosphatase family protein -
  V3C22_RS05370 (V3C22_05370) - 1120435..1120713 (-) 279 WP_002265496.1 UPF0223 family protein -
  V3C22_RS05375 (V3C22_05375) spx 1120706..1121119 (-) 414 WP_002263835.1 transcriptional regulator Spx -
  V3C22_RS05380 (V3C22_05380) - 1121180..1122100 (-) 921 WP_002262201.1 bifunctional riboflavin kinase/FAD synthetase -
  V3C22_RS05385 (V3C22_05385) truB 1122131..1123012 (-) 882 WP_419744513.1 tRNA pseudouridine(55) synthase TruB -
  V3C22_RS05390 (V3C22_05390) scnK 1123129..1124436 (-) 1308 WP_226706961.1 ATP-binding protein Regulator
  V3C22_RS05395 (V3C22_05395) scnR 1124437..1125126 (-) 690 WP_226706963.1 response regulator Regulator
  V3C22_RS05400 (V3C22_05400) - 1125301..1126209 (+) 909 WP_192072244.1 ABC transporter ATP-binding protein -
  V3C22_RS05405 (V3C22_05405) - 1126209..1126949 (+) 741 WP_002264497.1 ABC transporter permease -
  V3C22_RS05410 (V3C22_05410) - 1126946..1127674 (+) 729 WP_002264496.1 ABC transporter permease -
  V3C22_RS05415 (V3C22_05415) - 1127801..1129165 (-) 1365 WP_002276259.1 DUF438 domain-containing protein -
  V3C22_RS05420 (V3C22_05420) - 1129165..1129398 (-) 234 WP_002262193.1 DUF1858 domain-containing protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26306.70 Da        Isoelectric Point: 6.9650

>NTDB_id=1105948 V3C22_RS05395 WP_226706963.1 1124437..1125126(-) (scnR) [Streptococcus mutans strain Xc]
MNYKEKKILILDDNPEILEMVQESLSIAGFNNLTSVQSKKEILEQLGKRSFDLAILDIMLPDGSGFEVLREIRKTSTMPV
LFLSAVSDIEKQYQGFELGADDYIVKPFRPKELELRILSILKRAYPEKDDTLILPTCQVNFSQALITKGELEIQLTAKEY
SILKVLYNNQNRIVTFDQLLEKVWGLQYQGYENTMMAHIRKIRQKIEANPSKPECLLTVKGLGYKLKVS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1105948 V3C22_RS05395 WP_226706963.1 1124437..1125126(-) (scnR) [Streptococcus mutans strain Xc]
ATGAATTATAAAGAGAAAAAAATCTTAATTTTAGATGACAATCCAGAAATTTTAGAAATGGTGCAAGAGTCTTTAAGCAT
TGCTGGTTTTAACAACCTAACAAGCGTGCAATCAAAAAAAGAGATCTTGGAGCAACTTGGCAAAAGATCCTTTGATTTGG
CCATTTTAGACATTATGTTGCCTGATGGTTCGGGTTTTGAGGTACTAAGAGAAATTCGGAAAACTTCTACTATGCCAGTA
CTCTTTTTGTCTGCGGTATCCGACATTGAAAAGCAATACCAAGGTTTTGAGTTGGGAGCGGACGACTACATCGTCAAACC
TTTTCGTCCTAAGGAATTGGAGTTGCGAATCCTTTCTATTTTAAAAAGAGCCTATCCTGAAAAGGACGATACCCTTATTT
TACCTACTTGTCAGGTCAACTTTAGTCAAGCTTTGATTACCAAAGGAGAATTGGAAATTCAGCTGACAGCTAAGGAATAC
AGTATTCTTAAAGTTTTATATAACAATCAAAATCGCATTGTTACCTTTGATCAACTCTTAGAAAAAGTTTGGGGTCTGCA
ATATCAAGGCTATGAAAATACTATGATGGCGCATATTCGCAAGATCAGGCAAAAGATTGAAGCCAATCCTTCTAAGCCAG
AATGTTTACTGACAGTTAAGGGCTTGGGTTACAAACTAAAGGTGAGTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

98.253

100

0.983
  micA Streptococcus pneumoniae Cp1015

37.768

100

0.384
  vicR Streptococcus mutans UA159

35.776

100

0.362

Multiple sequence alignment