Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnK   Type   Regulator
Locus tag   V3C22_RS05390 Genome accession   NZ_CP183775
Coordinates   1123129..1124436 (-) Length   435 a.a.
NCBI ID   WP_226706961.1    Uniprot ID   -
Organism   Streptococcus mutans strain Xc     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1118129..1129436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3C22_RS05360 (V3C22_05360) - 1118319..1119623 (-) 1305 WP_226708884.1 RsmF rRNA methyltransferase first C-terminal domain-containing protein -
  V3C22_RS05365 (V3C22_05365) - 1119687..1120445 (-) 759 WP_002262204.1 inositol monophosphatase family protein -
  V3C22_RS05370 (V3C22_05370) - 1120435..1120713 (-) 279 WP_002265496.1 UPF0223 family protein -
  V3C22_RS05375 (V3C22_05375) spx 1120706..1121119 (-) 414 WP_002263835.1 transcriptional regulator Spx -
  V3C22_RS05380 (V3C22_05380) - 1121180..1122100 (-) 921 WP_002262201.1 bifunctional riboflavin kinase/FAD synthetase -
  V3C22_RS05385 (V3C22_05385) truB 1122131..1123012 (-) 882 WP_419744513.1 tRNA pseudouridine(55) synthase TruB -
  V3C22_RS05390 (V3C22_05390) scnK 1123129..1124436 (-) 1308 WP_226706961.1 ATP-binding protein Regulator
  V3C22_RS05395 (V3C22_05395) scnR 1124437..1125126 (-) 690 WP_226706963.1 response regulator Regulator
  V3C22_RS05400 (V3C22_05400) - 1125301..1126209 (+) 909 WP_192072244.1 ABC transporter ATP-binding protein -
  V3C22_RS05405 (V3C22_05405) - 1126209..1126949 (+) 741 WP_002264497.1 ABC transporter permease -
  V3C22_RS05410 (V3C22_05410) - 1126946..1127674 (+) 729 WP_002264496.1 ABC transporter permease -
  V3C22_RS05415 (V3C22_05415) - 1127801..1129165 (-) 1365 WP_002276259.1 DUF438 domain-containing protein -
  V3C22_RS05420 (V3C22_05420) - 1129165..1129398 (-) 234 WP_002262193.1 DUF1858 domain-containing protein -

Sequence

Protein


Download         Length: 435 a.a.        Molecular weight: 50061.08 Da        Isoelectric Point: 9.7451

>NTDB_id=1105947 V3C22_RS05390 WP_226706961.1 1123129..1124436(-) (scnK) [Streptococcus mutans strain Xc]
MDTVKFFTKLLTKYVLLVFALIVGVIFVYGLVFLTYLNYYGKEKPELVYTKIAQSSQQDAFNISKRSQKEMDKQKTWAMV
LNQDGQIVQSYRLPQQLKRHYTNADMVKFSRWYLDDYPVFSYVRGQQILVFGYPKKYSLAKFNFYLNTQFIKNFLHLGFV
FLGIIFLFIFVLFSRSKLRIKKEIEPIVSALTFLSQGQSAALNEKGNLSEIKTALNETSHILEESNMMKEQWIRGVSHDL
RNPLMLISGYTSQLEQQYGHGKKTEQIENQIQNMKEMISNLNLSYLLDNQKRHSKFSSLDLAVVLRSVIADILNNYETVI
LHFDLPTEAVLVKGDATLLERAFRNLLLNSIKHSGSNQIDLTYQLFDNKVIIIIADKGTITAQKIVELNQKSTNYESHGM
GTVITKQIIKLHQGETVFSDNHPGLKVTIVLPCNG

Nucleotide


Download         Length: 1308 bp        

>NTDB_id=1105947 V3C22_RS05390 WP_226706961.1 1123129..1124436(-) (scnK) [Streptococcus mutans strain Xc]
ATGGATACCGTTAAATTTTTTACGAAGTTATTGACCAAGTATGTTCTATTAGTATTTGCCTTAATTGTAGGAGTTATTTT
TGTTTATGGCTTGGTTTTCTTAACCTATCTTAATTATTATGGAAAGGAAAAACCAGAGCTAGTTTACACCAAAATCGCTC
AATCGAGTCAACAAGATGCGTTCAATATTAGTAAAAGAAGTCAAAAAGAAATGGATAAACAAAAGACTTGGGCCATGGTA
TTAAATCAAGATGGTCAGATCGTCCAATCTTATCGTTTACCTCAACAGCTCAAAAGACATTATACCAATGCTGATATGGT
GAAATTTTCGCGCTGGTATTTAGATGATTATCCTGTTTTTTCCTATGTACGTGGTCAGCAGATTTTAGTTTTTGGCTATC
CCAAAAAGTATTCCCTAGCAAAGTTTAATTTTTATCTGAATACGCAATTTATTAAGAATTTTCTTCATTTAGGTTTTGTT
TTCTTAGGCATCATCTTTTTATTTATCTTTGTTCTTTTTAGTCGTTCAAAGCTGCGCATTAAAAAGGAAATAGAGCCGAT
TGTCTCTGCGCTCACTTTCCTGTCGCAAGGTCAAAGTGCTGCTCTTAATGAAAAAGGCAATCTTTCTGAAATTAAGACAG
CTCTTAATGAAACTTCTCATATTTTAGAAGAAAGTAATATGATGAAAGAACAGTGGATTAGAGGAGTCAGTCACGATTTG
CGCAACCCGCTGATGCTGATTTCAGGCTACACCAGTCAATTGGAACAACAATATGGTCATGGAAAGAAAACGGAGCAGAT
TGAAAATCAGATTCAAAATATGAAAGAAATGATTTCTAATCTTAATTTGAGCTACCTGTTGGATAATCAAAAGCGTCATT
CCAAATTTTCAAGCCTTGATTTAGCTGTTGTTCTGCGATCCGTAATTGCTGATATTCTAAATAATTATGAAACAGTTATA
CTTCATTTTGATTTACCTACAGAGGCGGTATTGGTAAAGGGTGATGCCACTTTATTAGAAAGGGCTTTTAGAAATCTTCT
GCTCAATAGTATTAAGCATAGTGGCTCTAATCAGATCGATTTGACTTATCAATTATTTGATAATAAAGTGATTATTATCA
TTGCAGATAAGGGAACTATTACAGCTCAGAAAATTGTAGAACTAAATCAAAAATCAACTAATTATGAGTCGCATGGCATG
GGCACCGTTATCACTAAGCAAATCATAAAACTTCATCAAGGTGAGACTGTCTTTTCAGATAATCATCCAGGTTTGAAAGT
GACGATTGTTTTGCCCTGTAACGGATGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(228-282)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(334-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnK Streptococcus mutans UA159

99.076

99.54

0.986

Multiple sequence alignment