Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACNFJ7_RS11735 Genome accession   NZ_CP183770
Coordinates   2539205..2539762 (-) Length   185 a.a.
NCBI ID   WP_019370993.1    Uniprot ID   A0A0W1QPE8
Organism   Sphingomonas sp. HT-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2534205..2544762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNFJ7_RS11715 (ACNFJ7_11715) - 2534645..2535709 (-) 1065 WP_019370989.1 sugar phosphate isomerase/epimerase family protein -
  ACNFJ7_RS11720 (ACNFJ7_11720) - 2535706..2536875 (-) 1170 WP_019370990.1 MFS transporter -
  ACNFJ7_RS11725 (ACNFJ7_11725) - 2537080..2538081 (+) 1002 WP_019370991.1 LacI family DNA-binding transcriptional regulator -
  ACNFJ7_RS11730 (ACNFJ7_11730) - 2538083..2539021 (-) 939 WP_037514132.1 3-keto-disaccharide hydrolase -
  ACNFJ7_RS11735 (ACNFJ7_11735) ssb 2539205..2539762 (-) 558 WP_019370993.1 single-stranded DNA-binding protein Machinery gene
  ACNFJ7_RS11740 (ACNFJ7_11740) - 2539826..2540011 (+) 186 WP_019370994.1 DUF4169 family protein -
  ACNFJ7_RS11745 (ACNFJ7_11745) - 2540205..2542952 (+) 2748 WP_019370995.1 helicase C-terminal domain-containing protein -
  ACNFJ7_RS11750 (ACNFJ7_11750) - 2542949..2543482 (+) 534 WP_019370996.1 SixA phosphatase family protein -
  ACNFJ7_RS11755 (ACNFJ7_11755) - 2543489..2543818 (-) 330 WP_019370997.1 MerR family transcriptional regulator -
  ACNFJ7_RS11760 (ACNFJ7_11760) - 2543827..2544126 (-) 300 WP_019370998.1 integration host factor subunit alpha -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 19213.92 Da        Isoelectric Point: 5.0421

>NTDB_id=1105891 ACNFJ7_RS11735 WP_019370993.1 2539205..2539762(-) (ssb) [Sphingomonas sp. HT-1]
MAGSVNKVILVGNLGRDPESRSFQNGGKVVELRIATSESWKDRSSGEKREKTEWHTVKIFSEGLANVAERYLRKGSKVYL
EGQLQTRKWQDQSGADRYSTEIVLQGFNAQMVLLDGPGGGQGAGMGGGRSSGGDDWGADESFGGGGASGGRGGTFNGGGQ
RSGGATSGGGFGGGFPDDLDDDVPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=1105891 ACNFJ7_RS11735 WP_019370993.1 2539205..2539762(-) (ssb) [Sphingomonas sp. HT-1]
ATGGCGGGCAGCGTCAACAAAGTGATCCTGGTCGGCAATTTGGGGCGCGACCCCGAATCGCGGTCGTTCCAGAATGGCGG
CAAGGTGGTGGAACTGCGCATCGCCACGTCGGAAAGCTGGAAGGATCGCAGCAGCGGCGAGAAGCGCGAGAAGACCGAAT
GGCACACGGTGAAGATCTTCTCCGAAGGTCTCGCCAACGTTGCGGAGCGCTATCTGCGCAAGGGCAGCAAGGTCTATCTC
GAAGGTCAGCTGCAGACCCGCAAGTGGCAGGACCAGAGCGGCGCCGATCGCTATTCGACCGAAATCGTGCTGCAGGGCTT
CAACGCGCAGATGGTGCTGCTCGACGGACCCGGCGGCGGCCAGGGTGCGGGCATGGGTGGCGGCCGTAGCAGCGGCGGCG
ACGATTGGGGCGCGGACGAGTCGTTTGGCGGGGGCGGTGCGTCGGGCGGCCGCGGCGGTACCTTCAACGGGGGCGGCCAG
CGCAGCGGCGGTGCGACGAGCGGCGGCGGCTTTGGCGGCGGCTTCCCGGACGATCTGGACGACGACGTACCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W1QPE8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.404

100

0.492
  ssb Vibrio cholerae strain A1552

49.171

97.838

0.481
  ssb Neisseria gonorrhoeae MS11

37.297

100

0.373
  ssb Neisseria meningitidis MC58

37.297

100

0.373

Multiple sequence alignment