Detailed information NTG1105660

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ACNYC6_RS17820
• Genome accession: NZ_CP183416
• Coordinates: 3926433..3927764 (-)
• Length: 443 a.a.
• NCBI ID: WP_419708508.1
• Uniprot ID: -
• Organism: Pseudomonas sp. NFX224
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3921433..3932764

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACNYC6_RS17805 (ACNYC6_17805)	-	3921672..3924755 (+)	3084	WP_419708506.1	pilus assembly protein	-
ACNYC6_RS17810 (ACNYC6_17810)	-	3924770..3925171 (+)	402	WP_416129013.1	type IV pilin protein	-
ACNYC6_RS17815 (ACNYC6_17815)	thiO	3925228..3926328 (+)	1101	WP_419708507.1	glycine oxidase ThiO	-
ACNYC6_RS17820 (ACNYC6_17820)	pilR	3926433..3927764 (-)	1332	WP_419708508.1	sigma-54-dependent transcriptional regulator	Regulator
ACNYC6_RS17825 (ACNYC6_17825)	pilS	3927767..3929356 (-)	1590	WP_419708509.1	sensor histidine kinase	Regulator
ACNYC6_RS17830 (ACNYC6_17830)	-	3929346..3929579 (-)	234	WP_419708510.1	PP0621 family protein	-
ACNYC6_RS17835 (ACNYC6_17835)	-	3929717..3930739 (-)	1023	WP_419708511.1	outer membrane protein assembly factor BamD	-
ACNYC6_RS17840 (ACNYC6_17840)	rluD	3930891..3931853 (+)	963	WP_056855649.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
ACNYC6_RS17845 (ACNYC6_17845)	pgeF	3931850..3932575 (+)	726	WP_419708512.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 443 a.a.
• Molecular weight: 49584.00 Da
• Isoelectric Point: 6.7772

>NTDB_id=1105660 ACNYC6_RS17820 WP_419708508.1 3926433..3927764(-) (pilR) [Pseudomonas sp. NFX224]
MSPRQKVLIVDDEPDIRELLEITLGRMKLDTYSARNAGEALALLKRETFDLCLTDMRLPDGTGLDLVQHIQQRHPHVPVA
MITAYGNVDTAINALKAGAFDFLSKPVDLTRLRELVTSALLLPVPGVAIDRRLLGDSLPMRNLRKHIDKLARSQAPVYIS
GESGSGKELVARLIHDRGPRANQPFVPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLP
MQVKLLRAIQEKAVRSVGGQQEELVDVRILCATHKDLGAEVAAERFRQDLYYRLNVIELRVPPLRERRDDIEPLAGHVLK
RLAIDTGQPEAKLHPQALDALKSYRFPGNVRELENMLERAHTLCENKQIEAGDLRLAEGNCHPEGGVPDLTQIDNLEAYL
ENVERQLLLQALEETRWNRTAAAQRLNLSFRSMRYRLKKFGLD

Nucleotide

• Length: 1332 bp

>NTDB_id=1105660 ACNYC6_RS17820 WP_419708508.1 3926433..3927764(-) (pilR) [Pseudomonas sp. NFX224]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGACGACGAACCGGACATCCGCGAACTCCTGGAAATCACCCTGGGACGGAT
GAAACTCGATACCTACAGTGCGCGCAACGCCGGCGAGGCCCTGGCCCTGCTCAAGCGCGAAACGTTCGATCTGTGCCTGA
CCGACATGCGCCTGCCGGATGGCACCGGCCTTGATCTGGTGCAACACATCCAGCAACGTCACCCGCACGTTCCGGTGGCG
ATGATCACCGCTTACGGCAATGTCGACACGGCAATCAACGCCCTCAAGGCTGGCGCGTTCGACTTCCTGAGCAAACCGGT
GGACCTCACCCGCCTGCGGGAACTGGTCACCAGCGCCCTGCTCCTGCCCGTCCCTGGCGTGGCCATTGACCGGCGCTTGC
TCGGCGATTCATTGCCCATGCGCAATTTGCGCAAACACATCGACAAACTGGCGCGCAGCCAGGCGCCGGTGTACATCAGC
GGTGAATCCGGTAGCGGCAAGGAATTGGTGGCGCGGCTGATCCATGATCGCGGTCCCCGCGCCAATCAACCCTTTGTTCC
GGTCAACTGCGGGGCGATTCCGTCGGAACTGATGGAAAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGCGCCA
TCGAAGACAAACCCGGTCTGTTCCAGGCCGCCCATGGCGGCACGCTGTTCCTCGACGAAGTGGCTGACTTGCCGCTGCCG
ATGCAGGTCAAATTGTTACGGGCCATTCAGGAGAAAGCTGTACGCAGCGTCGGCGGGCAACAGGAAGAGTTGGTCGACGT
GCGTATTCTTTGCGCGACCCACAAAGATCTTGGCGCCGAAGTCGCTGCCGAACGCTTTCGCCAGGATTTGTACTATCGTC
TGAACGTGATCGAGCTGCGGGTTCCGCCCTTGCGTGAACGTCGCGATGACATCGAACCGCTGGCTGGCCATGTGCTTAAG
CGCCTGGCTATCGACACCGGCCAGCCGGAAGCAAAACTCCACCCGCAAGCACTCGATGCGCTGAAAAGTTACCGTTTCCC
CGGAAACGTCCGGGAACTGGAGAACATGCTCGAACGCGCTCACACGCTTTGCGAAAACAAACAGATTGAAGCGGGCGACC
TGCGACTGGCCGAGGGCAACTGTCATCCGGAAGGAGGCGTACCGGATCTGACGCAGATCGACAATCTGGAAGCGTACCTG
GAAAACGTCGAACGCCAGCTTCTTCTGCAAGCACTGGAAGAAACCCGCTGGAACCGCACGGCGGCGGCTCAGCGGTTGAA
TCTTTCATTCAGGTCTATGCGTTATCGGCTGAAGAAATTCGGGTTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

• Bacterial regulatory protein, Fis family (HTH_8) (400-440)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	77.652	100	0.777
pilR	Acinetobacter baumannii strain A118	49.455	100	0.512
luxO	Vibrio cholerae strain A1552	36.404	100	0.366