Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ACNYC6_RS17825 Genome accession   NZ_CP183416
Coordinates   3927767..3929356 (-) Length   529 a.a.
NCBI ID   WP_419708509.1    Uniprot ID   -
Organism   Pseudomonas sp. NFX224     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3922767..3934356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNYC6_RS17810 (ACNYC6_17810) - 3924770..3925171 (+) 402 WP_416129013.1 type IV pilin protein -
  ACNYC6_RS17815 (ACNYC6_17815) thiO 3925228..3926328 (+) 1101 WP_419708507.1 glycine oxidase ThiO -
  ACNYC6_RS17820 (ACNYC6_17820) pilR 3926433..3927764 (-) 1332 WP_419708508.1 sigma-54-dependent transcriptional regulator Regulator
  ACNYC6_RS17825 (ACNYC6_17825) pilS 3927767..3929356 (-) 1590 WP_419708509.1 sensor histidine kinase Regulator
  ACNYC6_RS17830 (ACNYC6_17830) - 3929346..3929579 (-) 234 WP_419708510.1 PP0621 family protein -
  ACNYC6_RS17835 (ACNYC6_17835) - 3929717..3930739 (-) 1023 WP_419708511.1 outer membrane protein assembly factor BamD -
  ACNYC6_RS17840 (ACNYC6_17840) rluD 3930891..3931853 (+) 963 WP_056855649.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACNYC6_RS17845 (ACNYC6_17845) pgeF 3931850..3932575 (+) 726 WP_419708512.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58642.51 Da        Isoelectric Point: 6.9972

>NTDB_id=1105661 ACNYC6_RS17825 WP_419708509.1 3927767..3929356(-) (pilS) [Pseudomonas sp. NFX224]
MIAEASSHSDKQAQRLLRLYHLYRLSVGIILVLLISSNMDNRLLASANDDLLSSGSWLYLVLNILLVVFFENTRHPAQLF
SLALLDVLLLCGLFFAAGGVASAIGNLLIVSVAISNTLLRRRIGLLIAAVGAIGIVGSSFLLNVSHRANPNDYLQVGTLG
ALCFAAALLVQGLVRRLEVSETLVEQKASEVVGLETLNALILQRMRTGILVLDEQRRVQLANHSALTLLGCDRLEGRLID
DHLPALVDRLNLWLSNPTLRPQSLKIASSGVELQPSFIALDPSPQHQTLIFLEDLAHIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLRESEELNRADQRLTQIIQDHSQRMNRVIENVLQLSRRQQTVPQRLDLKPWLQQFVTETREGATER
QQIHLHIAAGDFKTLMDPNQLNQILDNLVRNGWRHSAQSHDQAQVWLELFIDPDSQLPILEILDDGPGVAADHQPQLFEP
FFTTSHQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQG

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=1105661 ACNYC6_RS17825 WP_419708509.1 3927767..3929356(-) (pilS) [Pseudomonas sp. NFX224]
GTGATCGCTGAGGCGTCCAGTCACAGCGACAAACAGGCCCAGCGACTGCTGCGCCTTTATCATCTCTACCGTTTAAGCGT
CGGCATCATCCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCTTGCTGGCCTCGGCCAATGACGACCTGCTGAGCT
CTGGCAGTTGGTTGTATCTGGTGCTGAACATTCTGCTGGTGGTGTTCTTCGAGAACACCCGCCATCCGGCGCAACTGTTC
AGCCTGGCGTTACTCGATGTACTGCTGCTGTGCGGCCTGTTCTTCGCTGCCGGCGGCGTTGCCAGCGCCATTGGCAACTT
GCTGATCGTTTCGGTGGCCATCAGCAATACGTTGTTGCGAAGACGCATCGGCCTGCTGATTGCCGCCGTCGGCGCGATCG
GCATTGTCGGTTCGAGTTTCCTGTTGAACGTCAGCCATCGCGCCAATCCCAATGACTATTTGCAGGTCGGCACCCTCGGC
GCCCTGTGTTTTGCCGCAGCCCTGCTGGTGCAAGGCCTGGTCCGACGGCTGGAAGTCAGCGAAACGCTGGTGGAGCAGAA
GGCCAGTGAAGTCGTCGGCCTGGAAACGCTCAATGCACTGATCCTGCAACGCATGCGCACCGGCATCCTGGTGCTCGACG
AGCAGCGGCGCGTGCAATTGGCCAACCACAGTGCCCTGACGCTGCTCGGCTGTGACCGACTGGAAGGCCGACTGATCGAC
GACCACCTCCCGGCGCTTGTCGATCGCCTGAACCTGTGGCTCAGCAACCCGACCCTGCGCCCGCAAAGCCTGAAAATCGC
CAGCAGCGGCGTTGAGCTGCAGCCCAGTTTCATAGCACTGGACCCCAGCCCGCAGCATCAGACACTGATCTTTCTCGAGG
ATCTCGCTCACATCGCGCAACAGGCCCAACAACTGAAACTTGCCGCTCTCGGGCGCCTGACCGCCGGCATCGCCCACGAA
ATTCGCAACCCGCTGGGCGCCATCAGTCATGCCGCACAGCTATTGCGCGAATCTGAGGAACTCAACCGTGCGGATCAACG
TCTGACCCAGATCATTCAAGATCACTCCCAACGCATGAATCGAGTCATCGAAAACGTCCTGCAACTGTCCCGACGCCAGC
AAACCGTGCCGCAACGGTTGGACCTGAAGCCGTGGCTGCAACAGTTCGTCACTGAAACCCGCGAGGGCGCGACCGAGCGC
CAGCAGATTCATCTGCACATCGCTGCGGGAGACTTCAAGACCTTGATGGACCCGAACCAGTTGAACCAGATTCTCGACAA
CCTGGTTCGCAACGGCTGGCGTCATAGCGCCCAGAGCCACGATCAGGCACAGGTCTGGCTTGAGTTGTTTATCGACCCCG
ACAGCCAGTTGCCAATCCTTGAAATCCTCGACGACGGCCCCGGTGTGGCCGCGGACCATCAGCCGCAACTGTTCGAGCCT
TTCTTCACCACCAGCCACCAAGGCACTGGCCTGGGGCTGTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACTTTTGCTCACGGACGGAAACAAGGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.227

99.811

0.601

Multiple sequence alignment